fit: Call Julia code to fit the values

In RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification

Call Julia code to fit the values

Description

Call Julia code to fit the values

Usage

fit(rtigerobj, max.iter , eps,
trace, all = TRUE, random = FALSE,
specific = FALSE, nsamples = 20,
post.processing = TRUE)

Arguments

rtigerobj	an RTIGER object.
max.iter	maximum number of iterations to acomplish by the EM.
eps	differnece threshold to halt the EM.
trace	logical value whether to trace the changes in the parameters along the iterations.
all	logical value whether to use all data to fit the model.
random	if all FALSE use random samples.
specific	if all FALSE use specific samples.
nsamples	if random TRUE, how many samples to use.
post.processing	logical value, whether to run post.processing process.

Value

RTIGER object

Examples

## Not run: 
data("fittedExample")
sourceJulia()
myfit = fit(myDat, max.iter = 2, eps=0.01,
            trace = TRUE, all = TRUE,
            random = FALSE, specific = FALSE,
            nsamples = 20, post.processing = TRUE)


## End(Not run)

RTIGER documentation built on March 31, 2023, 5:41 p.m.