ASpli: Analysis of alternative splicing using RNA-Seq

Integrative pipeline for the analyisis of alternative splicing using RNAseq.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ASpli")
AuthorEstefania Mancini, Marcelo Yanovsky and Ariel Chernomoretz
Bioconductor views Alignment AlternativeSplicing Coverage DifferentialExpression DifferentialSplicing GeneExpression GenomeAnnotation RNASeq Sequencing TimeCourse Transcription
Date of publicationNone
MaintainerEstefania Mancini <emancini@leloir.org.ar>
LicenseGPL
Version1.0.0

View on Bioconductor

Functions

altPSI Man page
altPSI,ASpliAS-method Man page
AsDiscover Man page
AsDiscover,ASpliCounts-method Man page
ASpli Man page
ASpliAS-class Man page
ASpliCounts Man page
ASpliCounts-class Man page
ASpliDU-class Man page
ASpliFeatures-class Man page
ASpli-package Man page
binGenome Man page
binGenome-methods Man page
binGenome,TxDb-method Man page
binsDU Man page
binsDU,ASpliDU-method Man page
countsb Man page
countsb,ASpliCounts-method Man page
countse1i Man page
countse1i,ASpliCounts-method Man page
countsg Man page
countsg,ASpliCounts-method Man page
countsie2 Man page
countsie2,ASpliCounts-method Man page
countsj Man page
countsj,ASpliCounts-method Man page
DUreport Man page
DUreport,ASpliCounts-method Man page
DUreport_DEXSeq Man page
DUreport_DEXSeq,ASpliCounts-method Man page
esPSI Man page
esPSI,ASpliAS-method Man page
featuresb Man page
featuresb,ASpliFeatures-method Man page
featuresg Man page
featuresg,ASpliFeatures-method Man page
featuresj Man page
featuresj,ASpliFeatures-method Man page
genesDE Man page
genesDE,ASpliDU-method Man page
irPIR Man page
irPIR,ASpliAS-method Man page
joint Man page
joint,ASpliAS-method Man page
junctionsDU Man page
junctionsDU,ASpliDU-method Man page
junctionsPIR Man page
junctionsPIR,ASpliAS-method Man page
junctionsPSI Man page
junctionsPSI,ASpliAS-method Man page
loadBAM Man page
plotTopTags Man page
rds Man page
rds,ASpliCounts-method Man page
rdsb Man page
rdsb,ASpliCounts-method Man page
rdsg Man page
rdsg,ASpliCounts-method Man page
readCounts Man page
readCounts,ASpliFeatures-method Man page
show,ASpliAS-method Man page
show,ASpliCounts-method Man page
show,ASpliDU-method Man page
show,ASpliFeatures-method Man page
show-methods Man page
writeAll Man page
writeAll,ANY-method Man page
writeAS Man page
writeAS,ASpliAS-method Man page
writeAS-methods Man page
writeCounts Man page
writeCounts,ASpliCounts-method Man page
writeCounts-methods Man page
writeDU Man page
writeDU,ASpliDU-method Man page
writeDU-methods Man page
writeRds Man page
writeRds,ASpliCounts-method Man page
writeRds-methods Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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