Integrative pipeline for the analyisis of alternative splicing using RNAseq.
|Author||Estefania Mancini, Marcelo Yanovsky and Ariel Chernomoretz|
|Date of publication||None|
|Maintainer||Estefania Mancini <firstname.lastname@example.org>|
acc_AS: Accessors for ASpliAS object
acc_counts: Accessors for ASpliCounts object
acc_DU: Accessors for ASpliDU object
acc_features: Accessors for ASpliFeatures object
AsDiscover-methods: Report PSI and PIR using experimental junctions
ASpliAS-class: Class '"ASpliAS"'
ASpliCounts: Class '"ASpliCounts"'
ASpliCounts-class: Class '"ASpliCounts"'
ASpliDU-class: Class '"ASpliDU"'
ASpliFeatures-class: Class '"ASpliFeatures"'
ASpli-package: Analysis of alternative splicing using RNAseq
binGenome: Feature coordinates extraction
binGenome-methods: Feature coordinates extraction
DUreport: Differential gene expression and differential bin/junction...
DUreport_DEXSeq: Differential gene expression and differential bin/junction...
loadBAM: Load BAM files
plotTopTags: Coverage plots
rds: Divides read counts by gene and bin length
readCounts: Summarize read overlaps
show-methods: Display a summary of data contained in ASpliObjects
write: Write results
write-methods: Write results