Files in ASpli
Analysis of alternative splicing using RNA-Seq

NEWS
DESCRIPTION
Readme.md
NAMESPACE
inst/doc/ASpli.Rnw
inst/doc/ASpli.pdf inst/doc/ASpli.R
inst/extdata/B_D_1.bam.bai
inst/extdata/A_D_1.bam
inst/extdata/A_D_0.bam.bai
inst/extdata/genes.mini.gtf
inst/extdata/counts.gene.counts
inst/extdata/counts.e1i.counts
inst/extdata/counts.gene.rd
inst/extdata/A_C_1.bam
inst/extdata/B_C_0.bam.bai
inst/extdata/as.altPSI
inst/extdata/A_C_2.bam.bai
inst/extdata/du.junctions
inst/extdata/B_C_0.bam
inst/extdata/as.junctionsPSI
inst/extdata/as.join
inst/extdata/counts.bin.rd
inst/extdata/counts.ie2.counts
inst/extdata/as.irPIR
inst/extdata/B_C_2.bam
inst/extdata/A_D_0.bam
inst/extdata/B_C_1.bam
inst/extdata/A_D_2.bam.bai
inst/extdata/B_D_2.bam
inst/extdata/B_C_2.bam.bai
inst/extdata/A_C_0.bam
inst/extdata/B_C_1.bam.bai
inst/extdata/A_D_2.bam
inst/extdata/counts.exon.intron.counts
inst/extdata/B_D_0.bam
inst/extdata/A_C_2.bam
inst/extdata/counts.junction.counts
inst/extdata/as.junctionsPIR
inst/extdata/A_C_1.bam.bai
inst/extdata/du.genes
inst/extdata/B_D_0.bam.bai
inst/extdata/B_D_2.bam.bai
inst/extdata/chr14.sqlite
inst/extdata/genes.mini2.gtf
inst/extdata/B_D_1.bam
inst/extdata/as.esPSI
inst/extdata/du.bins
inst/extdata/A_D_1.bam.bai
inst/extdata/A_C_0.bam.bai
vignettes/wf.png
vignettes/binDefinition.png
vignettes/venn.png
vignettes/create_plotbin_example2_data.R
vignettes/ASpli.Rnw
vignettes/create_plotbin_example1_data.R
vignettes/LRR1_E005.png
vignettes/psi_altSS.png
vignettes/ASpli.bib
vignettes/pir.png
vignettes/psi_es.png
vignettes/images/ZNF410_E013_gr.pdf vignettes/images/pir.pdf vignettes/images/GENE10_E002_gr.pdf vignettes/images/binDefinition.pdf
vignettes/images/psi_pir.svg
vignettes/images/psi_pir2.pdf
vignettes/images/workflow.svg
vignettes/images/binDefinition.svg
vignettes/images/pir_junc.pdf vignettes/images/workflow.pdf vignettes/images/psi5ss.pdf vignettes/images/GENE02_E002_pr.pdf vignettes/images/GENE02_E002_gr.pdf vignettes/images/psi3ss.pdf
vignettes/images/psi_pir2.svg
vignettes/images/psi_pir_junc.pdf
vignettes/images/psi_pir_junc.svg
vignettes/images/event_assignment.pdf vignettes/images/psi_junc.pdf vignettes/images/psies.pdf vignettes/images/GENE02_E002b_pr.pdf
vignettes/images/event_assignment.svg
vignettes/images/binDefinition.gtf
R/ASDiscover_functions.R R/DUreport_functions.R R/binGenome_functions.R R/common_functions.R R/example_data.R R/loadBam_function.R R/getConditions_function.R R/ASpli_show_methods.R R/plotBins_functions.R R/plotGenomeRegions_functions.R R/readCounts_functions.R R/filter_functions.R R/bins_DEXSeq.R R/filterCounts.R R/ASpli_methods.R R/subset_methods.R R/mergeBinDUAS_functions.R man/containsJunctions-function.Rd man/DUreport.Rd man/AsDiscover-methods.Rd man/plotGenomicRegions.Rd man/acc_features.Rd man/ASpliCounts-class.Rd man/write.Rd man/readCounts.Rd man/rds.Rd man/acc_counts.Rd man/example_data.Rd man/ASpliAS-class.Rd man/ASpli-package.Rd man/filterDU-method.Rd man/show-methods.Rd man/mergeBinDUAS-method.Rd man/junctionDUreport.Rd man/binGenome-methods.Rd man/getConditions-function.Rd man/plotBins.Rd man/subset-methods.Rd man/acc_DU.Rd man/DUreportBinSplice-method.Rd man/ASpliCounts.Rd man/loadBAM.Rd man/binGenome.Rd man/ASpliDU-class.Rd man/acc_AS.Rd man/ASpliFeatures-class.Rd man/write-methods.Rd
build/vignette.rds
ASpli documentation built on May 2, 2018, 3:33 a.m.