ASpliCounts-class: Class '"ASpliCounts"'

In ASpli: Analysis of Alternative Splicing Using RNA-Seq

Description

Contains results of read overlaps against all feature levels summarization

Slots

gene.counts:

Object of class "data.frame"

exon.intron.counts:

Object of class "data.frame"

junction.counts:

Object of class "data.frame"

e1i.counts:

Object of class "data.frame"

ie2.counts:

Object of class "data.frame"

gene.rd:

Object of class "data.frame"

bin.rd:

Object of class "data.frame"

condition.order:

Object of class "character"

targets:

Object of class "data.frame"

.ASpliVersion:

ASpli version when this object was created. It should not be modified by the user.

Methods

AsDiscover

psi and pir metrics

countsb

bin counts accesor

countse1i

e1i counts accesor

countsg

gene counts accesor

countsie2

ie2 counts accesor

countsj

junction counts accesor

DUreport_DEXSeq

differential expression and usage estimation using DEXSeq

DUreport

differential expression and usage estimation using DEXSeq

rdsb

bin read densities accesor

rdsg

gen read densities acceesor

rds

compute read densities on genes and bins

writeCounts

Export count tables

writeRds

Export read density tables

Author(s)

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

ASpli documentation built on Nov. 8, 2020, 5:21 p.m.