acc_AS: Accessors for ASpliAS object

Description Usage Arguments Value Author(s) Examples

Description

Methods to retrieve and set data in ASpliAS object. Setting data into an ASpliAS object is not a typical task and must be done with care, because it can affect the integrity of the object.

Usage

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altPSI( x )
esPSI( x )
irPIR( x )
joint( x )
junctionsPIR( x )
junctionsPSI( x )

Arguments

x

An ASpliAS object

Value

Returns dataframes with genomic metadata and PSI and PIR metrics

Author(s)

Estefania Mancini, Marcelo Yanovsky, Ariel Chernomoretz

Examples

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# Accessing data tables from an ASpliAS object

as <- aspliASexample()

ap <- altPSI(as)
ep <- esPSI(as)
ip <- irPIR(as)
j  <- joint(as)
jpi <- junctionsPIR(as)
jps <- junctionsPSI(as)

# Setting data tables to an ASpliAS object

as2 <- new( 'ASpliAS' )

altPSI( as2 )  <- ap
esPSI( as2 )  <- ep
irPIR( as2 )  <- ip
joint( as2 )  <- j
junctionsPIR( as2 )  <- jpi
junctionsPSI( as2 )  <- jps

ASpli documentation built on May 2, 2018, 3:33 a.m.