Man pages for ASpli
Analysis of alternative splicing using RNA-Seq

acc_ASAccessors for ASpliAS object
acc_countsAccessors for ASpliCounts object
acc_DUAccessors for ASpliDU object
acc_featuresAccessors for ASpliFeatures object
AsDiscover-methodsReport PSI and PIR using experimental junctions
ASpliAS-classClass '"ASpliAS"'
ASpliCountsClass '"ASpliCounts"'
ASpliCounts-classClass '"ASpliCounts"'
ASpliDU-classClass '"ASpliDU"'
ASpliFeatures-classClass '"ASpliFeatures"'
ASpli-packageAnalysis of alternative splicing using RNAseq
binGenomeFeature coordinates extraction
binGenome-methodsFeature coordinates extraction
containsJunctions-functionExamine ASpliDU objects
DUreportDifferential gene expression and differential bin usage...
DUreportBinSplice-methodDifferential gene expression and differential bin usage...
example_dataExample Aspli objects
filterDU-methodFiltering ASpliDU objects
getConditions-functionRetrieve condition names from a targets data frame.
junctionDUreportDifferential junction usage estimation
loadBAMLoad BAM files
mergeBinDUAS-methodDifferential usage of bins and PSI/PIR.
plotBinsDraw plots of gene counts, bin counts, PSI/PIR value,...
plotGenomicRegionsCreate genomic regions coverage plots
rdsRead density of gene and bins
readCountsSummarize read overlaps
show-methodsDisplay a summary of data contained in ASpliObjects
subset-methodsSubset ASpli objects
writeWrite results
write-methodsWrite results
ASpli documentation built on Jan. 5, 2019, 6:33 p.m.