The edge package implements methods for carrying out differential expression analyses of genome-wide gene expression studies. Significance testing using the optimal discovery procedure and generalized likelihood ratio tests (equivalent to F-tests and t-tests) are implemented for general study designs. Special functions are available to facilitate the analysis of common study designs, including time course experiments. Other packages such as snm, sva, and qvalue are integrated in edge to provide a wide range of tools for gene expression analysis.
|Author||John D. Storey, Jeffrey T. Leek and Andrew J. Bass|
|Bioconductor views||DataImport DifferentialExpression GeneExpression MultipleComparison Regression TimeCourse|
|Maintainer||John D. Storey <firstname.lastname@example.org>, Andrew J. Bass <email@example.com>|
|License||MIT + file LICENSE|
|Package repository||View on Bioconductor|
Install the latest version of this package by entering the following in R:
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.