deFit-class: The differential expression class for the model fits

In edge: Extraction of Differential Gene Expression

Description

Object returned from fit_models containing information regarding the model fits for the experiment.

Slots

fit.full

matrix: containing fitted values for the full model.

fit.null

matrix: containing fitted values for the null model.

res.full

matrix: the residuals of the full model.

res.null

matrix: the residuals of the null model.

dH.full

vector: contains diagonal elements in the projection matrix for the full model.

beta.coef

matrix: fitted coefficients for the full model.

stat.type

string: information on the statistic of interest. Currently, the only options are “lrt” and “odp”.

Methods

fitNull(deFit)

Access fitted data from null model.

fitFull(deFit)

Access fitted data from full model.

resNull(deFit)

Access residuals from null model fit.

resFull(deFit)

Access residuals from full model fit.

betaCoef(deFit)

Access beta coefficients in linear model.

sType(deFit)

Access statistic type of model fitting utilized in function.

Author(s)

John Storey, Jeffrey Leek, Andrew Bass

edge documentation built on Nov. 8, 2020, 6:48 p.m.