waveTiling: Wavelet-Based Models for Tiling Array Transcriptome Analysis

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

AuthorKristof De Beuf <kristof.debeuf@UGent.be>, Peter Pipelers <peter.pipelers@ugent.be> and Lieven Clement <lieven.clement@gmail.com>
Date of publicationNone
MaintainerKristof De Beuf <kristof.debeuf@UGent.be>
LicenseGPL (>=2)
Version1.16.0
https://r-forge.r-project.org/projects/wavetiling/

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Files in this package

waveTiling/DESCRIPTION
waveTiling/NAMESPACE
waveTiling/R
waveTiling/R/allClasses.R waveTiling/R/allGenerics.R waveTiling/R/helperFunctions.R waveTiling/R/initialize-methods.R waveTiling/R/methods-MapFilterProbe.R waveTiling/R/methods-WaveTilingFeatureSet.R waveTiling/R/methods-WfmFit.R waveTiling/R/methods-WfmInf.R waveTiling/R/show-methods.R
waveTiling/build
waveTiling/build/vignette.rds
waveTiling/inst
waveTiling/inst/NEWS.Rd
waveTiling/inst/doc
waveTiling/inst/doc/waveTiling-vignette.R
waveTiling/inst/doc/waveTiling-vignette.Rnw
waveTiling/inst/doc/waveTiling-vignette.pdf
waveTiling/man
waveTiling/man/GenomeInfo-class.Rd waveTiling/man/MapFilterProbe-class.Rd waveTiling/man/WaveTilingFeatureSet-class.Rd waveTiling/man/WfmFit-class.Rd waveTiling/man/WfmFitCircadian-class.Rd waveTiling/man/WfmFitCustom-class.Rd waveTiling/man/WfmFitFactor-class.Rd waveTiling/man/WfmFitTime-class.Rd waveTiling/man/WfmInf-class.Rd waveTiling/man/WfmInfCompare-class.Rd waveTiling/man/WfmInfCustom-class.Rd waveTiling/man/WfmInfEffects-class.Rd waveTiling/man/WfmInfMeans-class.Rd waveTiling/man/WfmInfOverallMean-class.Rd waveTiling/man/addPheno.Rd waveTiling/man/bgCorrQn.Rd waveTiling/man/cel2TilingFeatureSet.Rd waveTiling/man/filterOverlap.Rd waveTiling/man/getNonAnnotatedRegions.Rd waveTiling/man/getSigGenes.Rd waveTiling/man/makeContrasts.Rd waveTiling/man/makeDesign.Rd waveTiling/man/plotWfm.Rd waveTiling/man/selectProbesFromFilterOverlap.Rd waveTiling/man/selectProbesFromTilingFeatureSet.Rd waveTiling/man/wfm.fit.Rd waveTiling/man/wfm.inference.Rd
waveTiling/src
waveTiling/src/waveTiling.c
waveTiling/vignettes
waveTiling/vignettes/waveTiling-vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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