This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.
|Author||Kristof De Beuf <kristof.debeuf@UGent.be>, Peter Pipelers <email@example.com> and Lieven Clement <firstname.lastname@example.org>|
|Date of publication||None|
|Maintainer||Kristof De Beuf <kristof.debeuf@UGent.be>|
addPheno: Add phenotypic info to 'WaveTilingFeatureSet'
bgCorrQn: Background correction and quantile normalization
cel2TilingFeatureSet: Read CEL-files to TilingFeatureSet
filterOverlap: function to filter probe sequence overlaps and remap probes
GenomeInfo-class: Class "genomeInfo"
getNonAnnotatedRegions: Get non-annotated regions
getSigGenes: Get significant genes
makeContrasts: Construct contrast matrix
makeDesign: Construct design matrix
MapFilterProbe-class: Class "MapFilterProbe"
plotWfm: plot model fit and genomic regions
selectProbesFromFilterOverlap: select probes from 'MapFilterProbe' object
selectProbesFromTilingFeatureSet: select probes from 'WaveTilingFeatureSet' object
WaveTilingFeatureSet-class: Class "WaveTilingFeatureSet"
wfm.fit: Fit Wfm model to trancriptome data
WfmFitCircadian-class: Class "WfmFitCircadian"
WfmFit-class: Class "WfmFit"
WfmFitCustom-class: Class "WfmFitCustom"
WfmFitFactor-class: Class "WfmFitFactor"
WfmFitTime-class: Class "WfmFitTime"
WfmInf-class: Class "WfmInf"
WfmInfCompare-class: Class "WfmInfCompare"
WfmInfCustom-class: Class "WfmInfCustom"
WfmInfEffects-class: Class "WfmInfEffects"
wfm.inference: Perform transcriptome analysis on fitted wavelet-based...
WfmInfMeans-class: Class "WfmInfMeans"
WfmInfOverallMean-class: Class "WfmInfOverallMean"