MapFilterProbe-class: Class "MapFilterProbe"

In waveTiling: Wavelet-Based Models for Tiling Array Transcriptome Analysis

Description

class to store probe information after remapping and/or filtering of probes.

Usage

## Accessors

getChromosome(object)
getFilteredIndices(object)
getPosition(object)
getStrand(object)

Arguments

object

An instance of MapFilterProbe-class.

Objects from the Class

Objects can be created by calls of the form new("mapFilterProbe", filteredIndices, chromosome, position, strand).

Slots

filteredIndices:

Object of class "vector" ~~

chromosome:

Object of class "vector" ~~

position:

Object of class "vector" ~~

strand:

Object of class "vector" ~~

Methods

getChromosome

signature(object = "MapFilterProbe"): ...

getFilteredIndices

signature(object = "MapFilterProbe"): ...

getPosition

signature(object = "MapFilterProbe"): ...

getStrand

signature(object = "MapFilterProbe"): ...

initialize

signature(.Object = "MapFilterProbe"): ...

selectProbesFromFilterOverlap

signature(object = "MapFilterProbe"): ...

show

signature(object = "MapFilterProbe"): ...

Accessors

In the following code snippets, x is a MapFilterProbe object.

getChromosome(x): Extract the chromosome identifiers.

getFilteredIndices(x): Extract the filtered probe indices.

getPosition(x): Extract the genomic position of the filtered probes.

getStrand(x): Extract the strand orientation info for the filtered probes.

Author(s)

Kristof De Beuf <[e-mail]>

Examples

  showClass("MapFilterProbe")
  
  library(waveTilingData)
  data(leafdevMapAndFilterTAIR9)
  tt1 <- getChromosome(leafdevMapAndFilterTAIR9)
  tt2 <- getFilteredIndices(leafdevMapAndFilterTAIR9)
  tt3 <- getPosition(leafdevMapAndFilterTAIR9)
  tt4 <- getStrand(leafdevMapAndFilterTAIR9)

waveTiling documentation built on Oct. 31, 2019, 9:23 a.m.