Man pages for waveTiling
Wavelet-Based Models for Tiling Array Transcriptome Analysis

addPhenoAdd phenotypic info to 'WaveTilingFeatureSet'
bgCorrQnBackground correction and quantile normalization
cel2TilingFeatureSetRead CEL-files to TilingFeatureSet
filterOverlapfunction to filter probe sequence overlaps and remap probes
GenomeInfo-classClass "genomeInfo"
getNonAnnotatedRegionsGet non-annotated regions
getSigGenesGet significant genes
makeContrastsConstruct contrast matrix
makeDesignConstruct design matrix
MapFilterProbe-classClass "MapFilterProbe"
plotWfmplot model fit and genomic regions
selectProbesFromFilterOverlapselect probes from 'MapFilterProbe' object
selectProbesFromTilingFeatureSetselect probes from 'WaveTilingFeatureSet' object
WaveTilingFeatureSet-classClass "WaveTilingFeatureSet"
wfm.fitFit Wfm model to trancriptome data
WfmFitCircadian-classClass "WfmFitCircadian"
WfmFit-classClass "WfmFit"
WfmFitCustom-classClass "WfmFitCustom"
WfmFitFactor-classClass "WfmFitFactor"
WfmFitTime-classClass "WfmFitTime"
WfmInf-classClass "WfmInf"
WfmInfCompare-classClass "WfmInfCompare"
WfmInfCustom-classClass "WfmInfCustom"
WfmInfEffects-classClass "WfmInfEffects"
wfm.inferencePerform transcriptome analysis on fitted wavelet-based...
WfmInfMeans-classClass "WfmInfMeans"
WfmInfOverallMean-classClass "WfmInfOverallMean"
waveTiling documentation built on Nov. 17, 2017, 10:34 a.m.