selectProbesFromTilingFeatureSet: select probes from 'WaveTilingFeatureSet' object

Description Usage Arguments Value Author(s) Examples

Description

Extract the probe indices from a WaveTilingFeatureSet object that map to a region between two specified genomic positions

Usage

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selectProbesFromTilingFeatureSet(object, chromosome, strand=c("forward","reverse"), minPos, maxPos)

Arguments

object

object of class WaveTilingFeatureSet

chromosome

chromosome

strand

strand

minPos

minimum genomic position

maxPos

maximum genomic position

Value

vector of integers indicating the probe indices

Author(s)

Kristof De Beuf <kristof.debeuf@ugent.be>

Examples

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  ## Not run: 
    data(leafdevBQ)
    tt <- selectProbesFromTilingFeatureSet(leafdevBQ,chromosome=1,strand="forward",minPos=22000,maxPos=26000)
    length(tt)
    head(tt)
  
## End(Not run)

waveTiling documentation built on Oct. 31, 2019, 9:23 a.m.