selectProbesFromTilingFeatureSet: select probes from 'WaveTilingFeatureSet' object

In waveTiling: Wavelet-Based Models for Tiling Array Transcriptome Analysis

Description

Extract the probe indices from a WaveTilingFeatureSet object that map to a region between two specified genomic positions

Usage

selectProbesFromTilingFeatureSet(object, chromosome, strand=c("forward","reverse"), minPos, maxPos)

Arguments

object	object of class WaveTilingFeatureSet
chromosome	chromosome
strand	strand
minPos	minimum genomic position
maxPos	maximum genomic position

Value

vector of integers indicating the probe indices

Author(s)

Kristof De Beuf <[e-mail]>

Examples

  ## Not run: 
    data(leafdevBQ)
    tt <- selectProbesFromTilingFeatureSet(leafdevBQ,chromosome=1,strand="forward",minPos=22000,maxPos=26000)
    length(tt)
    head(tt)
  
## End(Not run)

waveTiling documentation built on Oct. 31, 2019, 9:23 a.m.