jgilis/satuRn_jgilis: Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications

satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.

Getting started

Package details

Bioconductor views DifferentialExpression GeneExpression MultipleComparison RNASeq Regression Sequencing SingleCell Software TimeCourse Transcriptomics Visualization
URL https://github.com/jgilis/satuRn
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jgilis/satuRn_jgilis documentation built on Jan. 21, 2021, 12:24 a.m.