sumExp_example: A 'SummarizedExperiment' derived from our case study which...
In jgilis/satuRn_jgilis: Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications
Description
A 'SummarizedExperiment' derived from our case study which builds on the dataset of Tasic et al. It contains the same cells
as the data object used in the vignette (see '?Tasic_counts_vignette' for more information). In this SummarizedExperiment, we
performed a filtering with the 'filterByExpr' of edgeR with more stringent than default parameter settings (min.count = 100,
min.total.count = 200, large.n = 50, min.prop = 0.9) to reduced the number of retained transcripts. We used this object to
create an executable example in the help files of satuRn.
Usage
1
Format
An object of class SummarizedExperiment with 1286 rows and 60 columns.
jgilis/satuRn_jgilis documentation built on Jan. 21, 2021, 12:24 a.m.
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Description
A 'SummarizedExperiment' derived from our case study which builds on the dataset of Tasic et al. It contains the same cells as the data object used in the vignette (see '?Tasic_counts_vignette' for more information). In this SummarizedExperiment, we performed a filtering with the 'filterByExpr' of edgeR with more stringent than default parameter settings (min.count = 100, min.total.count = 200, large.n = 50, min.prop = 0.9) to reduced the number of retained transcripts. We used this object to create an executable example in the help files of satuRn.
Usage
1 |
Format
An object of class SummarizedExperiment with 1286 rows and 60 columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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