gQTLBase: gQTLBase: infrastructure for eQTL, mQTL and similar studies

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Infrastructure for eQTL, mQTL and similar studies.

Author
VJ Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
VJ Carey <stvjc@channing.harvard.edu>
License
Artistic-2.0
Version
1.6.0

View on Bioconductor

Man pages

ciseStore-class
Class '"ciseStore"'
describeStore
collect basic descriptive statistics on ciseStore instances
extractByProbes
retrieve eqtlTest results from a ciseStore instance
gqtlBase-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("gQTLBase")}
mergeCIstates
merge ChromImpute chromatin states, or GWAS hit indicators,...
storeApply
apply a function over job results in a ciseStore instance
storeMapResults
use batchMapResults infrastructure to process results in a...
storeToFf
extract a vector from store results as ff (out of memory...
ufeatByTiling
split featurenames of SummarizedExperiment according to...

Files in this package

gQTLBase/DESCRIPTION
gQTLBase/NAMESPACE
gQTLBase/R
gQTLBase/R/cb2range.R
gQTLBase/R/d.R
gQTLBase/R/ffapp2.R
gQTLBase/R/gtpath.R
gQTLBase/R/mergeToLoci.R
gQTLBase/R/storeFuncs.R
gQTLBase/R/storeS4.R
gQTLBase/R/ufeatByTiling.R
gQTLBase/build
gQTLBase/build/partial.rdb
gQTLBase/build/vignette.rds
gQTLBase/inst
gQTLBase/inst/doc
gQTLBase/inst/doc/gQTLBase.R
gQTLBase/inst/doc/gQTLBase.Rmd
gQTLBase/inst/doc/gQTLBase.html
gQTLBase/inst/unitTests
gQTLBase/inst/unitTests/test_ciseStore.R
gQTLBase/man
gQTLBase/man/ciseStore-class.Rd
gQTLBase/man/describeStore.Rd
gQTLBase/man/extractByProbes.Rd
gQTLBase/man/gqtlBase-package.Rd
gQTLBase/man/mergeCIstates.Rd
gQTLBase/man/storeApply.Rd
gQTLBase/man/storeMapResults.Rd
gQTLBase/man/storeToFf.Rd
gQTLBase/man/ufeatByTiling.Rd
gQTLBase/tests
gQTLBase/tests/test-all.R
gQTLBase/vignettes
gQTLBase/vignettes/gQTLBase.Rmd