extractByProbes: retrieve eqtlTest results from a ciseStore instance
In gQTLBase: gQTLBase: infrastructure for eQTL, mQTL and similar studies

Description Usage Arguments Details Value Author(s) Examples

retrieve eqtlTest results from a ciseStore instance

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extractByProbes(store, probeids, extractTag = "probeid")
extractByRanges(store, gr)
extractBySymbols(store, symbols, sym2probe, extractTag = "probeid")

`store`	instance of `ciseStore-class`
`probeids, symbols`	vector character tokens
`gr`	instance of `GRanges-class`
`sym2probe`	named character vector of probeids with names given by corresponding symbols
`extractTag`	character atom telling what field in the archived GRanges is regarded as the probe or gene identifier

an index will be searched if created by the ciseStore constructor

a GRanges instance

VJ Carey <stvjc@channing.harvard.edu>

if (require(geuvStore2)) {
 store = makeGeuvStore2()
 ebp = extractByProbes(store, c("ENSG00000183814.10", "ENSG00000174827.9"))
 ebp
 rr = range(ebp)
 ebr = extractByRanges(store, rr)
 ebr
 s2p = structure(c("ENSG00000183814.10", "ENSG00000163207.5", "ENSG00000228449.1", 
	"ENSG00000137962.8", "ENSG00000232848.1", "ENSG00000227280.1", 
	"ENSG00000238081.1", "ENSG00000117480.10", "ENSG00000253368.2", 
	"ENSG00000174827.9"), .Names = c("LIN9", "IVL", "RP11-177A2.4", 
	"ARHGAP29", "CTA-215D11.4", "RP11-458D21.2", "RP4-620F22.3", 
	"FAAH", "TRNP1", "PDZK1"))
 ss = extractBySymbols(store, c("IVL", "FAAH", "PDZK1"), s2p)
 ss
 }