AnnotationDbi: Annotation Database Interface

Provides user interface and database connection code for annotation data packages using SQLite data storage.

AuthorHervé Pagès, Marc Carlson, Seth Falcon, Nianhua Li
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.36.2

View on Bioconductor

Man pages

AnnDbObj-class: AnnDbObj objects

AnnDbPkg-checker: Check the SQL data contained in an SQLite-based annotation...

AnnotationDb-class: AnnotationDb objects and their progeny, methods etc.

AnnotationDbi-internals: AnnotationDbi internals

Bimap: Bimap objects and the Bimap interface

Bimap-direction: Methods for getting/setting the direction of a Bimap object,...

Bimap-envirAPI: Environment-like API for Bimap objects

BimapFiltering: Methods for getting/setting the filters on a Bimap object

BimapFormatting: Formatting a Bimap as a list or character vector

Bimap-keys: Methods for manipulating the keys of a Bimap object

Bimap-toTable: Methods for manipulating a Bimap object in a data-frame style

colsAndKeytypes: Descriptions of available values for 'columns' and...

createSimpleBimap: Creates a simple Bimap from a SQLite database in an situation...

GOColsAndKeytypes: Descriptions of available values for 'columns' and 'keytypes'...

GOFrame: GOFrame and GOAllFrame objects

GOTerms-class: Class "GOTerms"

InparanoidColsAndKeytypes: Descriptions of available values for 'columns' and 'keytypes'...

inpIDMapper: Convenience functions for mapping IDs through an appropriate...

KEGGFrame: KEGGFrame objects

make_eg_to_go_map: Create GO to Entrez Gene maps for chip-based packages

makeGOGraph: A convenience function to generate graphs based on the GO.db...

print.probetable: Print method for probetable objects

toSQLStringSet: Convert a vector to a quoted string for use as a SQL value...

unlist2: A replacement for unlist() that does not mangle the names

Functions

ACCNUM Man page
ACYRTHOSIPHON_PISUM Man page
AEDES_AEGYPTI Man page
AgiAnnDbMap Man page
AgiAnnDbMap-class Man page
ALIAS Man page
AnnDbBimap Man page
AnnDbBimap-class Man page
AnnDbMap Man page
AnnDbMap-class Man page
AnnDbObj Man page
AnnDbObj-class Man page
AnnDbObj-objects Man page
AnnDbPkg-checker Man page
AnnObj Man page
AnnObj-class Man page
AnnotationDb Man page
AnnotationDb-class Man page
ANOPHELES_GAMBIAE Man page
APIS_MELLIFERA Man page
ARABIDOPSIS_THALIANA Man page
ARACYC Man page
ARACYCENZYME Man page
as.character,AnnDbBimap-method Man page
as.character,FlatBimap-method Man page
as.data.frame,Bimap-method Man page
as.list Man page
as.list,AgiAnnDbMap-method Man page
as.list,Bimap-method Man page
as.list,FlatBimap-method Man page
as.list,GoAnnDbBimap-method Man page
as.list,GOTermsAnnDbBimap-method Man page
as.list,IpiAnnDbMap-method Man page
ASPERGILLUS_FUMIGATUS Man page
BATRACHOCHYTRIUM_DENDROBATIDIS Man page
Bimap Man page
Bimap Man page
Bimap-class Man page
Bimap-direction Man page
Bimap-envirAPI Man page
BimapFormatting Man page
Bimap-keys Man page
[,Bimap-method Man page
[[,Bimap-method Man page
$,Bimap-method Man page
Bimap-toTable Man page
BOMBYX_MORI Man page
BOS_TAURUS Man page
BRANCHIOSTOMA_FLORIDAE Man page
BRUGIA_MALAYI Man page
CAENORHABDITIS_BRENNERI Man page
CAENORHABDITIS_BRIGGSAE Man page
CAENORHABDITIS_ELEGANS Man page
CAENORHABDITIS_JAPONICA Man page
CAENORHABDITIS_REMANEI Man page
CANDIDA_ALBICANS Man page
CANDIDA_GLABRATA Man page
CANIS_FAMILIARIS Man page
CAPITELLA_SPI Man page
CAVIA_PORCELLUS Man page
checkMAPCOUNTS Man page
ChipDb-class Man page
CHLAMYDOMONAS_REINHARDTII Man page
chooseCentralOrgPkgSymbol Man page
CHR Man page
CHRLOC Man page
CHRLOCEND Man page
CIONA_INTESTINALIS Man page
CIONA_SAVIGNYI Man page
class:AgiAnnDbMap Man page
class:AnnDbBimap Man page
class:AnnDbMap Man page
class:AnnDbObj Man page
class:AnnObj Man page
class:AnnotationDb Man page
class:Bimap Man page
class:FlatBimap Man page
class:Go3AnnDbBimap Man page
class:GOAllFrame Man page
class:GoAnnDbBimap Man page
class:GOFrame Man page
class:GOTerms Man page
class:GOTermsAnnDbBimap Man page
class:IpiAnnDbMap Man page
class:KEGGFrame Man page
class:L2Rlink Man page
class:ProbeAnnDbBimap Man page
class:ProbeAnnDbMap Man page
class:ProbeGo3AnnDbBimap Man page
class:ProbeIpiAnnDbMap Man page
COCCIDIOIDES_IMMITIS Man page
colmetanames Man page
colmetanames,AnnDbBimap-method Man page
colmetanames,FlatBimap-method Man page
colnames Man page
colnames,AnnDbBimap-method Man page
colnames,FlatBimap-method Man page
cols Man page
columns Man page
columns,AnnotationDb-method Man page
columns,ChipDb-method Man page
columns,GODb-method Man page
columns,Inparanoid8Db-method Man page
columns,InparanoidDb-method Man page
columns,OrgDb-method Man page
columns,ReactomeDb-method Man page
COMMON Man page
contents,Bimap-method Man page
COPRINOPSIS_CINEREUS Man page
count.links Man page
count.links,Bimap-method Man page
count.links,Go3AnnDbBimap-method Man page
count.mappedkeys Man page
count.mappedkeys,ANY-method Man page
count.mappedkeys,Bimap-method Man page
count.mappedLkeys Man page
count.mappedLkeys,AgiAnnDbMap-method Man page
count.mappedLkeys,AnnDbBimap-method Man page
count.mappedLkeys,Bimap-method Man page
count.mappedLkeys,Go3AnnDbBimap-method Man page
count.mappedRkeys Man page
count.mappedRkeys,AnnDbBimap-method Man page
count.mappedRkeys,AnnDbMap-method Man page
count.mappedRkeys,Bimap-method Man page
count.mappedRkeys,Go3AnnDbBimap-method Man page
createAnnObjs.SchemaChoice Man page
createSimpleBimap Man page
CRYPTOCOCCUS_NEOFORMANS Man page
CRYPTOSPORIDIUM_HOMINIS Man page
CRYPTOSPORIDIUM_PARVUM Man page
CULEX_PIPIENS Man page
CYANIDIOSCHYZON_MEROLAE Man page
DANIO_RERIO Man page
DAPHNIA_PULEX Man page
dbconn Man page
dbconn,AnnDbObj-method Man page
dbconn,AnnotationDb-method Man page
dbconn,environment-method Man page
dbconn,SQLiteConnection-method Man page
dbfile Man page
dbfile,AnnDbObj-method Man page
dbfile,AnnotationDb-method Man page
dbFileConnect Man page
dbFileDisconnect Man page
dbfile,environment-method Man page
dbfile,SQLiteConnection-method Man page
dbGetTable Man page
dbInfo Man page
dbInfo,AnnDbObj-method Man page
dbInfo,DBIConnection-method Man page
dbInfo,environment-method Man page
dbmeta Man page
dbmeta,AnnDbObj-method Man page
dbmeta,DBIConnection-method Man page
dbmeta,environment-method Man page
dbschema Man page
dbschema,AnnDbObj-method Man page
dbschema,DBIConnection-method Man page
dbschema,environment-method Man page
DEBARYOMYCES_HANSENII Man page
debugSQL Man page
Definition Man page
DEFINITION Man page
Definition,character-method Man page
Definition,GOTermsAnnDbBimap-method Man page
Definition,GOTerms-method Man page
DESCRIPTION Man page
DICTYOSTELIUM_DISCOIDEUM Man page
dim,Bimap-method Man page
direction Man page
direction<- Man page
direction<-,AnnDbBimap-method Man page
direction,AnnDbBimap-method Man page
direction<-,AnnDbMap-method Man page
direction<-,FlatBimap-method Man page
direction,FlatBimap-method Man page
DROSOPHILA_ANANASSAE Man page
DROSOPHILA_GRIMSHAWI Man page
DROSOPHILA_MELANOGASTER Man page
DROSOPHILA_MOJAVENSIS Man page
DROSOPHILA_PSEUDOOBSCURA Man page
DROSOPHILA_VIRILIS Man page
DROSOPHILA_WILLISTONI Man page
eapply Man page
eapply,Bimap-method Man page
ENSEMBL Man page
ENSEMBLPROT Man page
ENSEMBLTRANS Man page
ENTAMOEBA_HISTOLYTICA Man page
ENTREZID Man page
ENZYME Man page
EQUUS_CABALLUS Man page
ESCHERICHIA_COLIK12 Man page
EVIDENCE Man page
EVIDENCEALL Man page
exists Man page
exists,ANY,ANY,Bimap-method Man page
exists,ANY,Bimap,missing-method Man page
exposeAllProbes Man page
exposeAllProbes,AnnDbBimap-method Man page
filterSeeds Man page
FlatBimap Man page
FlatBimap-class Man page
FUSARIUM_GRAMINEARUM Man page
GALLUS_GALLUS Man page
GASTEROSTEUS_ACULEATUS Man page
GENENAME Man page
get Man page
get,ANY,ANY,Bimap-method Man page
get,ANY,Bimap,missing-method Man page
getBimapFilters Man page
getBimapFilters,AnnDbBimap-method Man page
getGOFrameData Man page
getGOFrameData,GOAllFrame-method Man page
getGOFrameData,GOFrame-method Man page
getKEGGFrameData Man page
getKEGGFrameData,KEGGAllFrame-method Man page
getKEGGFrameData,KEGGFrame-method Man page
getOrgPkgForSchema Man page
GIARDIA_LAMBLIA Man page
GO Man page
Go3AnnDbBimap Man page
Go3AnnDbBimap-class Man page
GOALL Man page
GOAllFrame Man page
GOAllFrame Man page
GOAllFrame-class Man page
GOAllFrame,GOFrame-method Man page
GoAnnDbBimap Man page
GoAnnDbBimap-class Man page
GODb-class Man page
GOFrame Man page
GOFrame Man page
GOFrame-class Man page
GOFrame,data.frame,character-method Man page
GOFrame,data.frame,missing-method Man page
GOID Man page
GOID Man page
GOID,character-method Man page
GOID,GOTermsAnnDbBimap-method Man page
GOID,GOTerms-method Man page
GOTerms Man page
GOTermsAnnDbBimap Man page
GOTermsAnnDbBimap-class Man page
GOTerms-class Man page
hasMultiProbes Man page
hasMultiProbes,ProbeAnnDbBimap-method Man page
hasMultiProbes,ProbeAnnDbMap-method Man page
hasMultiProbes,ProbeGo3AnnDbBimap-method Man page
hasMultiProbes,ProbeIpiAnnDbMap-method Man page
hasSingleProbes Man page
hasSingleProbes,ProbeAnnDbBimap-method Man page
hasSingleProbes,ProbeAnnDbMap-method Man page
hasSingleProbes,ProbeGo3AnnDbBimap-method Man page
hasSingleProbes,ProbeIpiAnnDbMap-method Man page
head,FlatBimap-method Man page
HELOBDELLA_ROBUSTA Man page
idConverter Man page
initialize,FlatBimap-method Man page
initialize,GOTerms-method Man page
initialize,L2Rlink-method Man page
InparanoidDb-class Man page
inpIDMapper Man page
INTERPRO Man page
intraIDMapper Man page
IPI Man page
IpiAnnDbMap Man page
IpiAnnDbMap-class Man page
isNA Man page
isNA,ANY-method Man page
isNA,Bimap-method Man page
isNA,environment-method Man page
IXODES_SCAPULARIS Man page
KEGGFrame Man page
KEGGFrame Man page
KEGGFrame-class Man page
KEGGFrame,data.frame,character-method Man page
KEGGFrame,data.frame,missing-method Man page
keyname Man page
keyname,Bimap-method Man page
keys Man page
keys Man page
keys<- Man page
keys,AnnotationDb-method Man page
keys<-,Bimap-method Man page
keys,Bimap-method Man page
keys,ChipDb-method Man page
keys,GODb-method Man page
keys,Inparanoid8Db-method Man page
keys,InparanoidDb-method Man page
keys,OrgDb-method Man page
keys,ReactomeDb-method Man page
keytypes Man page
keytypes,ChipDb-method Man page
keytypes,GODb-method Man page
keytypes,Inparanoid8Db-method Man page
keytypes,InparanoidDb-method Man page
keytypes,OrgDb-method Man page
keytypes,ReactomeDb-method Man page
KLUYVEROMYCES_LACTIS Man page
L2Rlink Man page
L2Rlink-class Man page
LEISHMANIA_MAJOR Man page
length,Bimap-method Man page
links Man page
links,AnnDbBimap-method Man page
links,Bimap-method Man page
links,FlatBimap-method Man page
links,Go3AnnDbBimap-method Man page
Lkeyname Man page
Lkeyname,AnnDbBimap-method Man page
Lkeyname,Bimap-method Man page
Lkeys Man page
Lkeys<- Man page
Lkeys<-,AnnDbBimap-method Man page
Lkeys,AnnDbBimap-method Man page
Lkeys<-,FlatBimap-method Man page
Lkeys,FlatBimap-method Man page
Lkeys,ProbeAnnDbBimap-method Man page
Lkeys,ProbeAnnDbMap-method Man page
Lkeys,ProbeGo3AnnDbBimap-method Man page
Lkeys,ProbeIpiAnnDbMap-method Man page
Llength Man page
Llength,AnnDbBimap-method Man page
Llength,Bimap-method Man page
Llength,ProbeAnnDbBimap-method Man page
Llength,ProbeAnnDbMap-method Man page
Llength,ProbeGo3AnnDbBimap-method Man page
Llength,ProbeIpiAnnDbMap-method Man page
loadDb Man page
LOTTIA_GIGANTEA Man page
ls Man page
ls,Bimap-method Man page
MACACA_MULATTA Man page
MAGNAPORTHE_GRISEA Man page
make_eg_to_go_map Man page
makeGOGraph Man page
make_go_to_eg_map Man page
MAP Man page
mapIds Man page
mapIds,AnnotationDb-method Man page
mapIds_base Man page
mappedkeys Man page
mappedkeys,Bimap-method Man page
mappedkeys,environment-method Man page
mappedkeys,vector-method Man page
mappedLkeys Man page
mappedLkeys,AgiAnnDbMap-method Man page
mappedLkeys,AnnDbBimap-method Man page
mappedLkeys,FlatBimap-method Man page
mappedLkeys,Go3AnnDbBimap-method Man page
mappedRkeys Man page
mappedRkeys,AnnDbBimap-method Man page
mappedRkeys,AnnDbMap-method Man page
mappedRkeys,FlatBimap-method Man page
mappedRkeys,Go3AnnDbBimap-method Man page
maskMultiProbes Man page
maskMultiProbes,AnnDbBimap-method Man page
maskSingleProbes Man page
maskSingleProbes,AnnDbBimap-method Man page
mergeToNamespaceAndExport Man page
metadata,AnnotationDb-method Man page
mget Man page
mget,ANY,Bimap-method Man page
mget,Bimap-method Man page
MONODELPHIS_DOMESTICA Man page
MONOSIGA_BREVICOLLIS Man page
MUS_MUSCULUS Man page
names,AnnotationDb-method Man page
NASONIA_VITRIPENNIS Man page
NCBICHIP_DB_SeedGenerator Man page
ncol Man page
ncol,Bimap-method Man page
NEMATOSTELLA_VECTENSIS Man page
NEUROSPORA_CRASSA Man page
nhit Man page
nhit,Bimap-method Man page
nhit,environment-method Man page
nhit,list-method Man page
nrow Man page
nrow,AnnDbBimap-method Man page
nrow,AnnDbTable-method Man page
nrow,Bimap-method Man page
nrow,FlatBimap-method Man page
nrow,Go3AnnDbBimap-method Man page
OMIM Man page
Ontology Man page
ONTOLOGY Man page
ONTOLOGY Man page
ONTOLOGYALL Man page
Ontology,character-method Man page
Ontology,GOTermsAnnDbBimap-method Man page
Ontology,GOTerms-method Man page
ORF Man page
OrgDb-class Man page
ORNITHORHYNCHUS_ANATINUS Man page
ORYZA_SATIVA Man page
ORYZIAS_LATIPES Man page
OSTREOCOCCUS_TAURI Man page
PAN_TROGLODYTES Man page
PATH Man page
PEDICULUS_HUMANUS Man page
PFAM Man page
PHYSCOMITRELLA_PATENS Man page
PHYTOPHTHORA_RAMORUM Man page
PHYTOPHTHORA_SOJAE Man page
PLASMODIUM_FALCIPARUM Man page
PLASMODIUM_VIVAX Man page
PMID Man page
PONGO_PYGMAEUS Man page
POPULUS_TRICHOCARPA Man page
print.probetable Man page
PRISTIONCHUS_PACIFICUS Man page
ProbeAnnDbBimap Man page
ProbeAnnDbBimap-class Man page
ProbeAnnDbMap Man page
ProbeAnnDbMap-class Man page
ProbeGo3AnnDbBimap Man page
ProbeGo3AnnDbBimap-class Man page
PROBEID Man page
ProbeIpiAnnDbMap Man page
ProbeIpiAnnDbMap-class Man page
PROSITE Man page
PUCCINIA_GRAMINIS Man page
Rattribnames Man page
Rattribnames<- Man page
Rattribnames<-,AnnDbBimap-method Man page
Rattribnames,AnnDbBimap-method Man page
Rattribnames,Bimap-method Man page
Rattribnames<-,FlatBimap-method Man page
Rattribnames<-,Go3AnnDbBimap-method Man page
RATTUS_NORVEGICUS Man page
ReactomeDb-class Man page
REFSEQ Man page
resort_base Man page
revmap Man page
revmap,AnnDbBimap-method Man page
revmap,Bimap-method Man page
revmap,environment-method Man page
revmap,list-method Man page
RHIZOPUS_ORYZAE Man page
Rkeyname Man page
Rkeyname,AnnDbBimap-method Man page
Rkeyname,Bimap-method Man page
Rkeys Man page
Rkeys<- Man page
Rkeys<-,AnnDbBimap-method Man page
Rkeys,AnnDbBimap-method Man page
Rkeys,AnnDbMap-method Man page
Rkeys<-,FlatBimap-method Man page
Rkeys,FlatBimap-method Man page
Rkeys,Go3AnnDbBimap-method Man page
Rlength Man page
Rlength,AnnDbBimap-method Man page
Rlength,AnnDbMap-method Man page
Rlength,Bimap-method Man page
Rlength,Go3AnnDbBimap-method Man page
SACCHAROMYCES_CEREVISIAE Man page
sample Man page
sample,Bimap-method Man page
sample,environment-method Man page
saveDb Man page
saveDb,AnnotationDb-method Man page
SCHISTOSOMA_MANSONI Man page
SCHIZOSACCHAROMYCES_POMBE Man page
SCLEROTINIA_SCLEROTIORUM Man page
Secondary Man page
Secondary,character-method Man page
Secondary,GOTermsAnnDbBimap-method Man page
Secondary,GOTerms-method Man page
select Man page
select,AnnotationDb-method Man page
select,ChipDb-method Man page
select,GODb-method Man page
select,Inparanoid8Db-method Man page
select,InparanoidDb-method Man page
select,OrgDb-method Man page
select,ReactomeDb-method Man page
setInpBimapFilter Man page
setInpBimapFilter,InpAnnDbBimap-method Man page
SGD Man page
show,AnnDbBimap-method Man page
show,AnnDbTable-method Man page
show,AnnotationDb-method Man page
show,FlatBimap-method Man page
show,GOTerms-method Man page
show,L2Rlink-method Man page
showQCData Man page
SMART Man page
SORGHUM_BICOLOR Man page
species Man page
species,AnnotationDb-method Man page
STAGONOSPORA_NODORUM Man page
STRONGYLOCENTROTUS_PURPURATUS Man page
subset,AnnDbBimap-method Man page
subset,Bimap-method Man page
summary,AnnDbBimap-method Man page
summary,Bimap-method Man page
SYMBOL Man page
Synonym Man page
Synonym,character-method Man page
Synonym,GOTermsAnnDbBimap-method Man page
Synonym,GOTerms-method Man page
tagname Man page
tagname,AnnDbBimap-method Man page
tagname,Bimap-method Man page
tail,FlatBimap-method Man page
TAIR Man page
TAKIFUGU_RUBRIPES Man page
taxonomyId Man page
taxonomyId,AnnotationDb-method Man page
Term Man page
TERM Man page
Term,character-method Man page
Term,GOTermsAnnDbBimap-method Man page
Term,GOTerms-method Man page
testForValidKeytype Man page
testSelectArgs Man page
TETRAHYMENA_THERMOPHILA Man page
TETRAODON_NIGROVIRIDIS Man page
THALASSIOSIRA_PSEUDONANA Man page
THEILERIA_ANNULATA Man page
THEILERIA_PARVA Man page
toggleProbes Man page
toggleProbes,ProbeAnnDbBimap-method Man page
toggleProbes,ProbeAnnDbMap-method Man page
toggleProbes,ProbeGo3AnnDbBimap-method Man page
toggleProbes,ProbeIpiAnnDbMap-method Man page
toSQLStringSet Man page
toTable Man page
toTable,Bimap-method Man page
toTable,FlatBimap-method Man page
TRIBOLIUM_CASTANEUM Man page
TRICHOMONAS_VAGINALIS Man page
TRICHOPLAX_ADHAERENS Man page
TRYPANOSOMA_CRUZI Man page
UNIGENE Man page
UNIPROT Man page
unlist2 Man page
USTILAGO_MAYDIS Man page
XENOPUS_TROPICALIS Man page
YARROWIA_LIPOLYTICA Man page

Files

AnnotationDbi/DESCRIPTION
AnnotationDbi/NAMESPACE
AnnotationDbi/NEWS
AnnotationDbi/R
AnnotationDbi/R/00RTobjs.R AnnotationDbi/R/AllClasses.R AnnotationDbi/R/AllGenerics.R AnnotationDbi/R/AnnDbObj-lowAPI.R AnnotationDbi/R/AnnDbPkg-checker.R AnnotationDbi/R/AnnDbPkg-templates-common.R AnnotationDbi/R/Bimap-envirAPI.R AnnotationDbi/R/Bimap.R AnnotationDbi/R/BimapFormatting.R AnnotationDbi/R/FlatBimap.R AnnotationDbi/R/GOTerms.R AnnotationDbi/R/SQL.R AnnotationDbi/R/createAnnObjs-utils.R AnnotationDbi/R/createAnnObjs.ARABIDOPSISCHIP_DB.R AnnotationDbi/R/createAnnObjs.ARABIDOPSIS_DB.R AnnotationDbi/R/createAnnObjs.COELICOLOR_DB.R AnnotationDbi/R/createAnnObjs.GO_DB.R AnnotationDbi/R/createAnnObjs.INPARANOID_DB.R AnnotationDbi/R/createAnnObjs.KEGG_DB.R AnnotationDbi/R/createAnnObjs.MALARIA_DB.R AnnotationDbi/R/createAnnObjs.NCBICHIP_DBs.R AnnotationDbi/R/createAnnObjs.NCBIORG_DBs.R AnnotationDbi/R/createAnnObjs.ORGANISM_DB.R AnnotationDbi/R/createAnnObjs.PFAM_DB.R AnnotationDbi/R/createAnnObjs.YEASTCHIP_DB.R AnnotationDbi/R/createAnnObjs.YEASTNCBI_DB.R AnnotationDbi/R/createAnnObjs.YEAST_DB.R AnnotationDbi/R/flatten.R AnnotationDbi/R/inpIDMapper.R AnnotationDbi/R/loadDb.R AnnotationDbi/R/makeMap.R AnnotationDbi/R/methods-AnnotationDb.R AnnotationDbi/R/methods-Inparanoid.R AnnotationDbi/R/methods-Inparanoid8.R AnnotationDbi/R/methods-ReactomeDb.R AnnotationDbi/R/methods-SQLiteConnection.R AnnotationDbi/R/methods-geneCentricDbs-keys.R AnnotationDbi/R/methods-geneCentricDbs.R AnnotationDbi/R/print.probetable.R AnnotationDbi/R/test_AnnotationDbi_package.R AnnotationDbi/R/unlist2.R AnnotationDbi/R/utils.R
AnnotationDbi/build
AnnotationDbi/build/vignette.rds
AnnotationDbi/inst
AnnotationDbi/inst/DBschemas
AnnotationDbi/inst/DBschemas/SchemaGuidelines.txt
AnnotationDbi/inst/DBschemas/schemas_0.9
AnnotationDbi/inst/DBschemas/schemas_0.9/00README.TXT
AnnotationDbi/inst/DBschemas/schemas_0.9/ARABIDOPSISCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/DataTypes.txt
AnnotationDbi/inst/DBschemas/schemas_0.9/FLYCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/FLY_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/GO_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/HUMANCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/HUMAN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/KEGG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/RODENTCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/RODENT_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/YEASTCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_0.9/YEAST_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0
AnnotationDbi/inst/DBschemas/schemas_1.0/00README.TXT
AnnotationDbi/inst/DBschemas/schemas_1.0/ARABIDOPSISCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/BOVINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/BOVINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/CANINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/CANINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/CHICKENCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/CHICKEN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/DataTypes.txt
AnnotationDbi/inst/DBschemas/schemas_1.0/ECOLICHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/ECOLI_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/FLYCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/FLY_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/GO_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/HUMANCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/HUMANCROSSCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/HUMAN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/INPARANOIDDROME_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/INPARANOIDHOMSA_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/INPARANOIDMUSMU_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/INPARANOIDRATNO_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/INPARANOIDSACCE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/KEGG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/MALARIA_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/MOUSECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/MOUSE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/PFAM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/PIGCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/PIG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/RATCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/RAT_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/WORMCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/WORM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/YEASTCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/YEAST_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/ZEBRAFISHCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_1.0/ZEBRAFISH_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0
AnnotationDbi/inst/DBschemas/schemas_2.0/00README.TXT
AnnotationDbi/inst/DBschemas/schemas_2.0/ANOPHELES_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/ARABIDOPSISCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/ARABIDOPSIS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/BOVINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/BOVINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/CANINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/CANINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/CHICKENCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/CHICKEN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/CHIMP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/DataTypes.txt
AnnotationDbi/inst/DBschemas/schemas_2.0/ECOLI_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/FLYCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/FLY_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/GO_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/HUMANCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/HUMAN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/INPARANOID_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/KEGG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/MALARIA_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/MOUSECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/MOUSE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/PFAM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/PIG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/RATCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/RAT_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/RHESUS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/WORMCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/WORM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/XENOPUSCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/XENOPUS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/YEASTCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/YEAST_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/ZEBRAFISHCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.0/ZEBRAFISH_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1
AnnotationDbi/inst/DBschemas/schemas_2.1/00README.TXT
AnnotationDbi/inst/DBschemas/schemas_2.1/ANOPHELES_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/ARABIDOPSISCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/ARABIDOPSIS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/BOVINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/BOVINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/CANINECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/CANINE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/CHICKENCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/CHICKEN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/CHIMP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/COELICOLOR_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/DataTypes.txt
AnnotationDbi/inst/DBschemas/schemas_2.1/ECOLI_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/FLYCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/FLY_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/GO_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/HUMANCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/HUMAN_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/INPARANOID_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/KEGG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/MALARIA_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/MOUSECHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/MOUSE_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/PFAM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/PIG_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/RATCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/RAT_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/RHESUS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/WORMCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/WORM_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/XENOPUSCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/XENOPUS_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/YEASTCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/YEAST_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/ZEBRAFISHCHIP_DB.sql
AnnotationDbi/inst/DBschemas/schemas_2.1/ZEBRAFISH_DB.sql
AnnotationDbi/inst/NOTES-Herve
AnnotationDbi/inst/TODO
AnnotationDbi/inst/doc
AnnotationDbi/inst/doc/AnnotationDbi.R
AnnotationDbi/inst/doc/AnnotationDbi.Rnw
AnnotationDbi/inst/doc/AnnotationDbi.pdf
AnnotationDbi/inst/doc/IntroToAnnotationPackages.R
AnnotationDbi/inst/doc/IntroToAnnotationPackages.Rnw
AnnotationDbi/inst/doc/IntroToAnnotationPackages.pdf
AnnotationDbi/inst/extdata
AnnotationDbi/inst/extdata/HG-U95Av2_probe_tab.gz
AnnotationDbi/inst/extdata/Inp_species_mapping
AnnotationDbi/inst/extdata/hcg110_ID
AnnotationDbi/inst/extdata/hgu95av2_ID
AnnotationDbi/inst/extdata/manyToOneBlackList.Rda
AnnotationDbi/inst/extdata/org.testing.db
AnnotationDbi/inst/extdata/org.testing.db/DESCRIPTION
AnnotationDbi/inst/extdata/org.testing.db/NAMESPACE
AnnotationDbi/inst/extdata/org.testing.db/R
AnnotationDbi/inst/extdata/org.testing.db/R/zzz.R
AnnotationDbi/inst/extdata/org.testing.db/inst
AnnotationDbi/inst/extdata/org.testing.db/inst/extdata
AnnotationDbi/inst/extdata/org.testing.db/inst/extdata/org.testing.sqlite
AnnotationDbi/inst/extdata/org.testing.db/man
AnnotationDbi/inst/extdata/org.testing.db/man/org.TguttataTestingSubset.egBASE.Rd
AnnotationDbi/inst/extdata/org.testing.db/man/org.TguttataTestingSubset.egORGANISM.Rd
AnnotationDbi/inst/extdata/org.testing.db/man/org.TguttataTestingSubset.eg_dbconn.Rd
AnnotationDbi/inst/extdata/resultTable.Rda
AnnotationDbi/inst/script
AnnotationDbi/inst/script/generateMultiCols.R
AnnotationDbi/inst/unitTests
AnnotationDbi/inst/unitTests/test_bimap.R
AnnotationDbi/inst/unitTests/test_geneCentricDbs.R
AnnotationDbi/inst/unitTests/test_mapIds.R
AnnotationDbi/inst/unitTests/test_select.R
AnnotationDbi/inst/unitTests/test_select_NOSCHEMA.R
AnnotationDbi/inst/unitTests/test_select_inparanoid.R
AnnotationDbi/inst/unitTests/test_select_reactome.R
AnnotationDbi/man
AnnotationDbi/man/AnnDbObj-class.Rd AnnotationDbi/man/AnnDbPkg-checker.Rd AnnotationDbi/man/AnnotationDb-class.Rd AnnotationDbi/man/AnnotationDbi-internals.Rd AnnotationDbi/man/Bimap-direction.Rd AnnotationDbi/man/Bimap-envirAPI.Rd AnnotationDbi/man/Bimap-keys.Rd AnnotationDbi/man/Bimap-toTable.Rd AnnotationDbi/man/Bimap.Rd AnnotationDbi/man/BimapFiltering.Rd AnnotationDbi/man/BimapFormatting.Rd AnnotationDbi/man/GOColsAndKeytypes.Rd AnnotationDbi/man/GOFrame.Rd AnnotationDbi/man/GOTerms-class.Rd AnnotationDbi/man/InparanoidColsAndKeytypes.Rd AnnotationDbi/man/KEGGFrame.Rd AnnotationDbi/man/colsAndKeytypes.Rd AnnotationDbi/man/createSimpleBimap.Rd AnnotationDbi/man/inpIDMapper.Rd AnnotationDbi/man/makeGOGraph.Rd AnnotationDbi/man/make_eg_to_go_map.Rd AnnotationDbi/man/print.probetable.Rd AnnotationDbi/man/toSQLStringSet.Rd AnnotationDbi/man/unlist2.Rd
AnnotationDbi/tests
AnnotationDbi/tests/AnnotationDbi_unit_tests.R
AnnotationDbi/vignettes
AnnotationDbi/vignettes/AnnotationDbi.Rnw
AnnotationDbi/vignettes/IntroToAnnotationPackages.Rnw
AnnotationDbi/vignettes/databaseTypes.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.