fcScan: fcScan for detecting clusters of coordinates with user defined options

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

Package details

AuthorAbdullah El-Kurdi <ak161@aub.edu.lb> Ghiwa khalil <gk39@aub.edu.lb> Georges Khazen <gkhazen@lau.edu.lb> Pierre Khoueiry <pk17@aub.edu.lb>
Bioconductor views Clustering GenomeAnnotation
MaintainerPierre Khoueiry <pk17@aub.edu.lb> Abdullah El-Kurdi <ak161@aub.edu.lb>
LicenseArtistic-2.0
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fcScan")

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fcScan documentation built on Nov. 8, 2020, 5:43 p.m.