EnrichedHeatmap: Making Enriched Heatmaps

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

AuthorZuguang Gu
Date of publication2016-9-26 00:00:00
MaintainerZuguang Gu <z.gu@dkfz.de>
LicenseGPL (>= 2)
Version1.4.0
https://github.com/jokergoo/EnrichedHeatmap

View on Bioconductor

Functions

Files

EnrichedHeatmap/DESCRIPTION
EnrichedHeatmap/NAMESPACE
EnrichedHeatmap/NEWS
EnrichedHeatmap/R
EnrichedHeatmap/R/00_S4_generic_methods.R EnrichedHeatmap/R/EnrichedHeatmap.R EnrichedHeatmap/R/EnrichedHeatmapList.R EnrichedHeatmap/R/normalize.R EnrichedHeatmap/R/utils.R
EnrichedHeatmap/build
EnrichedHeatmap/build/vignette.rds
EnrichedHeatmap/inst
EnrichedHeatmap/inst/doc
EnrichedHeatmap/inst/doc/EnrichedHeatmap.R
EnrichedHeatmap/inst/doc/EnrichedHeatmap.Rmd
EnrichedHeatmap/inst/doc/EnrichedHeatmap.html
EnrichedHeatmap/inst/extdata
EnrichedHeatmap/inst/extdata/chr21_test_data.RData
EnrichedHeatmap/inst/extdata/neg_cr.RData
EnrichedHeatmap/inst/tests
EnrichedHeatmap/inst/tests/test-makeWindows.R
EnrichedHeatmap/inst/tests/test-normalizeToMatrix.R
EnrichedHeatmap/man
EnrichedHeatmap/man/EnrichedHeatmap-class.rd
EnrichedHeatmap/man/EnrichedHeatmap.rd
EnrichedHeatmap/man/EnrichedHeatmapList-class.rd
EnrichedHeatmap/man/EnrichedHeatmapList.rd
EnrichedHeatmap/man/Extract.normalizedMatrix.rd
EnrichedHeatmap/man/add.AdditiveUnit.rd
EnrichedHeatmap/man/anno_enriched.rd
EnrichedHeatmap/man/copyAttr.rd
EnrichedHeatmap/man/default_smooth_fun.rd
EnrichedHeatmap/man/draw-EnrichedHeatmap-method.rd
EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd
EnrichedHeatmap/man/draw-dispatch.rd
EnrichedHeatmap/man/enriched_score.rd
EnrichedHeatmap/man/getSignalsFromList.rd
EnrichedHeatmap/man/makeWindows.rd
EnrichedHeatmap/man/normalizeToMatrix.rd
EnrichedHeatmap/man/print.normalizedMatrix.rd
EnrichedHeatmap/man/show-EnrichedHeatmap-method.rd
EnrichedHeatmap/man/show-EnrichedHeatmapList-method.rd
EnrichedHeatmap/man/show-dispatch.rd
EnrichedHeatmap/test
EnrichedHeatmap/tests
EnrichedHeatmap/tests/test-all.R
EnrichedHeatmap/vignettes
EnrichedHeatmap/vignettes/EnrichedHeatmap.Rmd
EnrichedHeatmap/vignettes/complex.png
EnrichedHeatmap/vignettes/custom.css

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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