EnrichedHeatmap: Making Enriched Heatmaps

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")
AuthorZuguang Gu
Bioconductor views Coverage GenomeAnnotation Sequencing Software Visualization
Date of publication2016-9-26 00:00:00
MaintainerZuguang Gu <z.gu@dkfz.de>
LicenseGPL (>= 2)
Version1.4.0
https://github.com/jokergoo/EnrichedHeatmap

View on Bioconductor

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/00_S4_generic_methods.R R/EnrichedHeatmap.R R/EnrichedHeatmapList.R R/normalize.R R/utils.R
build
build/vignette.rds
inst
inst/doc
inst/doc/EnrichedHeatmap.R
inst/doc/EnrichedHeatmap.Rmd
inst/doc/EnrichedHeatmap.html
inst/extdata
inst/extdata/chr21_test_data.RData
inst/extdata/neg_cr.RData
inst/tests
inst/tests/test-makeWindows.R inst/tests/test-normalizeToMatrix.R
man
man/EnrichedHeatmap-class.rd
man/EnrichedHeatmap.rd
man/EnrichedHeatmapList-class.rd
man/EnrichedHeatmapList.rd
man/Extract.normalizedMatrix.rd
man/add.AdditiveUnit.rd
man/anno_enriched.rd
man/copyAttr.rd
man/default_smooth_fun.rd
man/draw-EnrichedHeatmap-method.rd
man/draw-EnrichedHeatmapList-method.rd
man/draw-dispatch.rd
man/enriched_score.rd
man/getSignalsFromList.rd
man/makeWindows.rd
man/normalizeToMatrix.rd
man/print.normalizedMatrix.rd
man/show-EnrichedHeatmap-method.rd
man/show-EnrichedHeatmapList-method.rd
man/show-dispatch.rd
test
tests
tests/test-all.R
vignettes
vignettes/EnrichedHeatmap.Rmd
vignettes/complex.png
vignettes/custom.css

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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