extract_anno_enriched: Extarct Enrichment Annotation Graphics as a Separated Plot

In EnrichedHeatmap: Making Enriched Heatmaps

Description

Extarct Enrichment Annotation Graphics as a Separated Plot

Usage

extract_anno_enriched(ht_list, which = NULL, newpage = TRUE, padding = NULL)

Arguments

ht_list	The heatmap list returned by draw,HeatmapList-method.
which	The index of enriched heatmap in the heatmap list. The value can be an integer index or a character index (the name of the heatmap).
newpage	Whether call grid.newpage to create a new page?
padding	Padding of the plot.

Details

The extracted plot is exactly the same as that on the enriched heatmap.

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
NULL

Example output

Loading required package: grid
Loading required package: ComplexHeatmap
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22

Attaching package: 'EnrichedHeatmap'

The following object is masked from 'package:ComplexHeatmap':

    +.AdditiveUnit

NULL

EnrichedHeatmap documentation built on Nov. 8, 2020, 8:20 p.m.