zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
Ribostan is a simple package which contains functionality related to ribosomal footprint data and quantitative analysis thereof. It includes functions to align A/P sites by maximizing including in the CDS, to produce plots of KL divergence in 'metacodon' plots, and to estimate Ribosomal Footprint densities in an isoform aware manner. It also provides functions for quantifying periodicity of open reading frames, and identifying translated uORFs.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Coverage DataImport GenomeAnnotation QualityControl RNASeq RiboSeq Sequencing Software Transcriptomics |
| Maintainer | |
| License | GPL-3 |
| Version | 0.99.10 |
| URL | https://github.com/ohlerlab/RiboStan |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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