get_metacodon_profs: Get A Granges object with locations of each codon in the...

get_metacodon_profsR Documentation

Get A Granges object with locations of each codon in the given cds

Description

Get A Granges object with locations of each codon in the given cds

Usage

get_metacodon_profs(covgrs, anno, n_wind_l_ext = 45)

Arguments

covgrs

A list of SimpleRleLists - RPF coverage

anno

An annotation object

n_wind_l_ext

The 5' extent of the window around the codon to return Defaults to: 45

Details

gets profiles of read 5' end occurence around codons

Value

A data frame with expected and actual rust score per position in window, codon, readlength

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com


zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.