get_metacodon_profs: Get A Granges object with locations of each codon in the...
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_metacodon_profs R Documentation
Get A Granges object with locations of each codon in the given cds
Description
Get A Granges object with locations of each codon in the given cds
Usage
get_metacodon_profs(covgrs, anno, n_wind_l_ext = 45)
Arguments
covgrs
A list of SimpleRleLists - RPF coverage
anno
An annotation object
n_wind_l_ext
The 5' extent of the window around the codon to return
Defaults to: 45
Details
gets profiles of read 5' end occurence around codons
Value
A data frame with expected and actual rust score per position in
window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.
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| get_metacodon_profs | R Documentation |
Get A Granges object with locations of each codon in the given cds
Description
Get A Granges object with locations of each codon in the given cds
Usage
get_metacodon_profs(covgrs, anno, n_wind_l_ext = 45)
Arguments
covgrs |
A list of SimpleRleLists - RPF coverage |
anno |
An annotation object |
n_wind_l_ext |
The 5' extent of the window around the codon to return Defaults to: 45 |
Details
gets profiles of read 5' end occurence around codons
Value
A data frame with expected and actual rust score per position in window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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