get_ritpms: get_ritpms
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_ritpms R Documentation
get_ritpms
Description
This function takes in a sparse matrix, and then samples a single value
from each column, with sampling weights within each column equal to
the columns values
Usage
get_ritpms(psites, anno)
Arguments
psites
A GRanges object containing RPFs
anno
An annotation object with a gene-transcript table
Value
a vector of normalized footprint densities
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
data(ms_df)
psites <- get_psite_gr(rpfs, offsets_df, chr22_anno)
# now, use Stan to estimate normalized p-site densities for our data
ritpms <- get_ritpms(psites, chr22_anno)
zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.
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| get_ritpms | R Documentation |
get_ritpms
Description
This function takes in a sparse matrix, and then samples a single value from each column, with sampling weights within each column equal to the columns values
Usage
get_ritpms(psites, anno)
Arguments
psites |
A GRanges object containing RPFs |
anno |
An annotation object with a gene-transcript table |
Value
a vector of normalized footprint densities
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
data(ms_df)
psites <- get_psite_gr(rpfs, offsets_df, chr22_anno)
# now, use Stan to estimate normalized p-site densities for our data
ritpms <- get_ritpms(psites, chr22_anno)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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