get_kl_df: Calculate KL-divergence from a data frame of rust expected...
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_kl_df R Documentation
Calculate KL-divergence from a data frame of rust expected and actual scores
Description
Calculate KL-divergence from a data frame of rust expected and actual scores
Usage
get_kl_df(metacodondf, anno)
Arguments
metacodondf
a data frame with metacodon info
anno
An annotation object
Value
A data frame with expected and actual rust score per position in
window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
covgrs <- list(sample1 = rpfs)
# note this doesn't work that well on a small subset
kl_df <- get_kl_df(metacodondf, chr22_anno)
zslastman/RiboStan documentation built on April 6, 2024, 1:35 p.m.
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| get_kl_df | R Documentation |
Calculate KL-divergence from a data frame of rust expected and actual scores
Description
Calculate KL-divergence from a data frame of rust expected and actual scores
Usage
get_kl_df(metacodondf, anno)
Arguments
metacodondf |
a data frame with metacodon info |
anno |
An annotation object |
Value
A data frame with expected and actual rust score per position in window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
data(chr22_anno)
data(rpfs)
data(offsets_df)
covgrs <- list(sample1 = rpfs)
# note this doesn't work that well on a small subset
kl_df <- get_kl_df(metacodondf, chr22_anno)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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