optimize_ritpms: Use a sparse mapping matrix to optimize ritpms
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
optimize_ritpms R Documentation
Use a sparse mapping matrix to optimize ritpms
Description
get optimal ritpms using stan
Usage
optimize_ritpms(spmat, anno, iternum = 500, verbose = FALSE)
Arguments
spmat
a sparse numeric matrix
anno
an annotation object
iternum
how many iterations to optimize TPMs for;
Defaults to 500
verbose
whether to show optimization messages from stan;
Defaults to FALSE
Value
A matrix of the infile
zslastman/RiboStan documentation built on April 6, 2024, 1:35 p.m.
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| optimize_ritpms | R Documentation |
Use a sparse mapping matrix to optimize ritpms
Description
get optimal ritpms using stan
Usage
optimize_ritpms(spmat, anno, iternum = 500, verbose = FALSE)
Arguments
spmat |
a sparse numeric matrix |
anno |
an annotation object |
iternum |
how many iterations to optimize TPMs for; Defaults to 500 |
verbose |
whether to show optimization messages from stan; Defaults to FALSE |
Value
A matrix of the infile
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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