optimize_ritpms: Use a sparse mapping matrix to optimize ritpms

optimize_ritpmsR Documentation

Use a sparse mapping matrix to optimize ritpms

Description

get optimal ritpms using stan

Usage

optimize_ritpms(spmat, anno, iternum = 500, verbose = FALSE)

Arguments

spmat

a sparse numeric matrix

anno

an annotation object

iternum

how many iterations to optimize TPMs for; Defaults to 500

verbose

whether to show optimization messages from stan; Defaults to FALSE

Value

A matrix of the infile


zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.