gene_level_elong: Aggregate transcript elongation scores to gene level

In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities

Aggregate transcript elongation scores to gene level

Description

Aggregate transcript elongation scores to gene level

Usage

gene_level_elong(tr_elong, ritpms, anno, exclude_uORFs = TRUE)

Arguments

tr_elong	elongation rates per transcript, data frame with columns orf_id, mean_occ
ritpms	a named vector of ritpms per transcript
anno	an annotation object
exclude_uORFs	exclude uORFs from the gene level total;Defaults to TRUE

Details

This function aggregates transript level ritpms to gene level,with the mean elongation rate over all the genes transcripts weighted by transcript abundance

Value

a data frame with columns mean_occ and gene_id

Author(s)

Dermot Harnett, [e-mail]

See Also

get_cds_reads, get_readlens

zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.