periodicity_filter_uORFs: Run Multitaper tests on a set of ORFs

periodicity_filter_uORFsR Documentation

Run Multitaper tests on a set of ORFs

Description

Run Multitaper tests on a set of ORFs

Usage

periodicity_filter_uORFs(psites, anno, remove = TRUE, n_cores = 1)

Arguments

psites

GRanges object with psite information

anno

annotation object

remove

whether to remove non-peridic uORFs

n_cores

number of cores to use

Details

This function applies a multitaper test to

Value

a numeric vector with the spectral coefficient at 0.333... and the pvalue for the test

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com

Examples

data(chr22_anno)
data(rpfs)
data(offsets_df)
psites <- get_psite_gr(rpfs, offsets_df, chr22_anno)
filteredanno <- periodicity_filter_uORFs(psites, chr22_anno)

zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.