Files in zslastman/RiboStan
Estimates Isoform Specific RPF Footprint Densities
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/anno.R
R/data.R
R/get_offsets.R
R/get_ritpms.R
R/kl_div.R
R/model_TE.R
R/periodicity_tests.R
R/sysdata.rda
R/utils-pipe.R
data-raw/create_testdata.R
data-raw/testing.R
data/chr22_anno.rda
data/metacodondf.rda
data/offsets_df.rda
data/rpfs.rda
inst/extdata/nchr22.bam
man/add_cor_offset.Rd
man/addphase.Rd
man/chr22_anno.Rd
man/convert_gtf.Rd
man/export_codon_dts.Rd
man/fmcols.Rd
man/ftest_orfs.Rd
man/ftestvect.Rd
man/gene_level_elong.Rd
man/gene_level_expr.Rd
man/get_cds_codons.Rd
man/get_cds_reads.Rd
man/get_cdsgrl.Rd
man/get_codon_occs.Rd
man/get_codposdf.Rd
man/get_cov_rust_scores.Rd
man/get_exprfile.Rd
man/get_incl_max_offsets.Rd
man/get_kl_df.Rd
man/get_metacodon_profs.Rd
man/get_offsets.Rd
man/get_orf_elong.Rd
man/get_psite_gr.Rd
man/get_psitecov.Rd
man/get_read_spmat.Rd
man/get_readgr.Rd
man/get_readlens.Rd
man/get_ribofasta_anno.Rd
man/get_ritpms.Rd
man/get_sitedf.Rd
man/get_trspace_cds.Rd
man/hasMstart.Rd
man/is_out_of_bounds.Rd
man/load_annotation.Rd
man/make_ext_fasta.Rd
man/mergeseqlevels.Rd
man/metacodondf.Rd
man/most_freq.Rd
man/offsets_df.Rd
man/optimize_ritpms.Rd
man/order_grl_st.Rd
man/periodicity_filter_uORFs.Rd
man/pipe.Rd
man/plot_kl_dv.Rd
man/read_ribobam.Rd
man/resize_grl.Rd
man/resize_grl_endfix.Rd
man/resize_grl_startfix.Rd
man/rpfs.Rd
man/sample_cols_spmat.Rd
man/sample_cov_gr.Rd
man/select_offsets.Rd
man/sort_grl_st.Rd
man/spl_mapFromTranscripts.Rd
man/subset_annotation.Rd
man/width1grs.Rd
tests/testthat.R
tests/testthat/test-annotation.R
tests/testthat/test-bamread.R
tests/testthat/test-get_codon_occs.R
tests/testthat/test-kl_div.R
tests/testthat/test-multitaper.R
tests/testthat/test-offsets_work.R
tests/testthat/test-psites.R
tests/testthat/test-quant.R
vignettes/Ribostan.rmd
