get_psitecov: Get a coverage RleList of psite coverage over a set of ORFs

get_psitecovR Documentation

Get a coverage RleList of psite coverage over a set of ORFs

Description

Get a coverage RleList of psite coverage over a set of ORFs

Usage

get_psitecov(rpfs, offsets_df, anno)

Arguments

rpfs
  • granges object with positions of footprints, in transcript space

offsets_df
  • a data frame with numeric columns readlen,phase,offset

anno
  • an annotation object with at least one ORF per transcript

Value

a numeric SimpleRleList for each ORF with p-site density

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com


zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.