get_psitecov: Get a coverage RleList of psite coverage over a set of ORFs
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_psitecov R Documentation
Get a coverage RleList of psite coverage over a set of ORFs
Description
Get a coverage RleList of psite coverage over a set of ORFs
Usage
get_psitecov(rpfs, offsets_df, anno)
Arguments
rpfs
granges object with positions of footprints, in transcript
space
offsets_df
a data frame with numeric columns readlen,phase,offset
anno
an annotation object with at least one ORF per transcript
Value
a numeric SimpleRleList for each ORF with p-site density
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
zslastman/RiboStan documentation built on April 6, 2024, 1:35 p.m.
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| get_psitecov | R Documentation |
Get a coverage RleList of psite coverage over a set of ORFs
Description
Get a coverage RleList of psite coverage over a set of ORFs
Usage
get_psitecov(rpfs, offsets_df, anno)
Arguments
rpfs |
|
offsets_df |
|
anno |
|
Value
a numeric SimpleRleList for each ORF with p-site density
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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