get_cov_rust_scores: Get A Granges object with locations of each codon in the...
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_cov_rust_scores R Documentation
Get A Granges object with locations of each codon in the given cds
Description
Get A Granges object with locations of each codon in the given cds
Usage
get_cov_rust_scores(rpf_cov, cds_codons)
Arguments
rpf_cov
A list of SimpleRleLists - RPF coverage split by readlength
cds_codons
GRanges object containing windows in which to get rust scores
Details
Use estimates of per codon dwell time to get the mean dwell time over transcrips
Value
A data frame with expected and actual rust score per position in window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
zslastman/RiboStan documentation built on April 6, 2024, 1:35 p.m.
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| get_cov_rust_scores | R Documentation |
Get A Granges object with locations of each codon in the given cds
Description
Get A Granges object with locations of each codon in the given cds
Usage
get_cov_rust_scores(rpf_cov, cds_codons)
Arguments
rpf_cov |
A list of SimpleRleLists - RPF coverage split by readlength |
cds_codons |
|
Details
Use estimates of per codon dwell time to get the mean dwell time over transcrips
Value
A data frame with expected and actual rust score per position in window, codon, readlength
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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