get_cov_rust_scores: Get A Granges object with locations of each codon in the...

get_cov_rust_scoresR Documentation

Get A Granges object with locations of each codon in the given cds

Description

Get A Granges object with locations of each codon in the given cds

Usage

get_cov_rust_scores(rpf_cov, cds_codons)

Arguments

rpf_cov

A list of SimpleRleLists - RPF coverage split by readlength

cds_codons
  • GRanges object containing windows in which to get rust scores

Details

Use estimates of per codon dwell time to get the mean dwell time over transcrips

Value

A data frame with expected and actual rust score per position in window, codon, readlength

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com


zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.