get_exprfile: Given a bam file, and transcript fasta, output a file of...
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
get_exprfile R Documentation
Given a bam file, and transcript fasta, output a file of ribosome densities
Description
Given a bam file, and transcript fasta, output a file of ribosome densities
Usage
get_exprfile(ribobam, ribofasta, outfile)
Arguments
ribobam
A bam file with RPFs
ribofasta
A gencode style fasta to which RPFs were aligned
outfile
the file to which the RPF densitites should be saved
Details
The Ribosome densities are saved in salmon format
Value
the file to which the table was saved
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
get_exprfile(ribobam, ribofasta, outfile)
zslastman/RiboStan documentation built on April 6, 2024, 1:35 p.m.
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| get_exprfile | R Documentation |
Given a bam file, and transcript fasta, output a file of ribosome densities
Description
Given a bam file, and transcript fasta, output a file of ribosome densities
Usage
get_exprfile(ribobam, ribofasta, outfile)
Arguments
ribobam |
A bam file with RPFs |
ribofasta |
A gencode style fasta to which RPFs were aligned |
outfile |
the file to which the RPF densitites should be saved |
Details
The Ribosome densities are saved in salmon format
Value
the file to which the table was saved
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
Examples
get_exprfile(ribobam, ribofasta, outfile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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