get_exprfile: Given a bam file, and transcript fasta, output a file of...

get_exprfileR Documentation

Given a bam file, and transcript fasta, output a file of ribosome densities

Description

Given a bam file, and transcript fasta, output a file of ribosome densities

Usage

get_exprfile(ribobam, ribofasta, outfile)

Arguments

ribobam

A bam file with RPFs

ribofasta

A gencode style fasta to which RPFs were aligned

outfile

the file to which the RPF densitites should be saved

Details

The Ribosome densities are saved in salmon format

Value

the file to which the table was saved

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com

Examples

get_exprfile(ribobam, ribofasta, outfile)

zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.