hasMstart: Check if a granges list of CDS have start codons
In zslastman/RiboStan: Estimates Isoform Specific RPF Footprint Densities
hasMstart R Documentation
Check if a granges list of CDS have start codons
Description
Check if a granges list of CDS have start codons
Usage
hasMstart(cdsgrl, fafileob)
Arguments
cdsgrl
GRangesList; List of filtered CDS GRanges from GTF
annotation
fafileob
FaFile object; reference to an indexed genomic
fasta file
Value
a granges object containing 1 or more element for each
transcript space range, in genome space, corresponding to pieces
of each element split by exon boundaries
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.
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| hasMstart | R Documentation |
Check if a granges list of CDS have start codons
Description
Check if a granges list of CDS have start codons
Usage
hasMstart(cdsgrl, fafileob)
Arguments
cdsgrl |
GRangesList; List of filtered CDS GRanges from GTF annotation |
fafileob |
FaFile object; reference to an indexed genomic fasta file |
Value
a granges object containing 1 or more element for each transcript space range, in genome space, corresponding to pieces of each element split by exon boundaries
Author(s)
Dermot Harnett, dermot.p.harnett@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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