hasMstart: Check if a granges list of CDS have start codons

hasMstartR Documentation

Check if a granges list of CDS have start codons

Description

Check if a granges list of CDS have start codons

Usage

hasMstart(cdsgrl, fafileob)

Arguments

cdsgrl

GRangesList; List of filtered CDS GRanges from GTF annotation

fafileob

FaFile object; reference to an indexed genomic fasta file

Value

a granges object containing 1 or more element for each transcript space range, in genome space, corresponding to pieces of each element split by exon boundaries

Author(s)

Dermot Harnett, dermot.p.harnett@gmail.com


zslastman/RiboStan documentation built on June 12, 2024, 1:59 a.m.