SummarizedExperiment: SummarizedExperiment container

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

AuthorMartin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.4.0

View on Bioconductor

Files in this package

SummarizedExperiment/DESCRIPTION
SummarizedExperiment/NAMESPACE
SummarizedExperiment/NEWS
SummarizedExperiment/R
SummarizedExperiment/R/Assays-class.R SummarizedExperiment/R/RangedSummarizedExperiment-class.R SummarizedExperiment/R/SummarizedExperiment-class.R SummarizedExperiment/R/coverage-methods.R SummarizedExperiment/R/findOverlaps-methods.R SummarizedExperiment/R/inter-range-methods.R SummarizedExperiment/R/intra-range-methods.R SummarizedExperiment/R/makeSummarizedExperimentFromDataFrame.R SummarizedExperiment/R/makeSummarizedExperimentFromExpressionSet.R SummarizedExperiment/R/nearest-methods.R SummarizedExperiment/R/readKallisto.R SummarizedExperiment/R/zzz.R
SummarizedExperiment/TODO
SummarizedExperiment/build
SummarizedExperiment/build/vignette.rds
SummarizedExperiment/inst
SummarizedExperiment/inst/doc
SummarizedExperiment/inst/doc/SummarizedExperiment.R
SummarizedExperiment/inst/doc/SummarizedExperiment.Rmd
SummarizedExperiment/inst/doc/SummarizedExperiment.html
SummarizedExperiment/inst/extdata
SummarizedExperiment/inst/extdata/kallisto
SummarizedExperiment/inst/extdata/kallisto/abundance.h5
SummarizedExperiment/inst/extdata/kallisto/abundance.tsv
SummarizedExperiment/inst/extdata/kallisto/abundance.txt
SummarizedExperiment/inst/extdata/kallisto/run_info.json
SummarizedExperiment/inst/scripts
SummarizedExperiment/inst/scripts/Find_and_update_objects
SummarizedExperiment/inst/scripts/Find_and_update_objects/README
SummarizedExperiment/inst/scripts/Find_and_update_objects/collect_rda_objects_to_update.R
SummarizedExperiment/inst/scripts/Find_and_update_objects/data_store_RDA_OBJECTS_TO_UPDATE
SummarizedExperiment/inst/scripts/Find_and_update_objects/pkgs_RDA_OBJECTS_TO_UPDATE
SummarizedExperiment/inst/scripts/Find_and_update_objects/scan_rda_files.R
SummarizedExperiment/inst/scripts/Find_and_update_objects/update_rda_objects.R
SummarizedExperiment/inst/unitTests
SummarizedExperiment/inst/unitTests/test_Assays-class.R
SummarizedExperiment/inst/unitTests/test_RangedSummarizedExperiment-class.R
SummarizedExperiment/inst/unitTests/test_SummarizedExperiment-class.R
SummarizedExperiment/inst/unitTests/test_coverage-methods.R
SummarizedExperiment/inst/unitTests/test_findOverlaps-methods.R
SummarizedExperiment/inst/unitTests/test_inter-range-methods.R
SummarizedExperiment/inst/unitTests/test_intra-range-methods.R
SummarizedExperiment/inst/unitTests/test_makeSummarizedExperimentFromDataFrame.R
SummarizedExperiment/inst/unitTests/test_makeSummarizedExperimentFromExpressionSet.R
SummarizedExperiment/inst/unitTests/test_nearest-methods.R
SummarizedExperiment/man
SummarizedExperiment/man/Assays-class.Rd SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd SummarizedExperiment/man/SummarizedExperiment-class.Rd SummarizedExperiment/man/coverage-methods.Rd SummarizedExperiment/man/findOverlaps-methods.Rd SummarizedExperiment/man/inter-range-methods.Rd SummarizedExperiment/man/intra-range-methods.Rd SummarizedExperiment/man/makeSummarizedExperimentFromDataFrame.Rd SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd SummarizedExperiment/man/nearest-methods.Rd SummarizedExperiment/man/readKallisto.Rd
SummarizedExperiment/tests
SummarizedExperiment/tests/run_unitTests.R
SummarizedExperiment/vignettes
SummarizedExperiment/vignettes/SummarizedExperiment.Rmd

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