Bioconductor/GenomicRanges: Representation and manipulation of genomic intervals

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.

Getting started

Package details

AuthorP. Aboyoun, H. Pagès, and M. Lawrence
Bioconductor views Annotation Coverage DataRepresentation Genetics GenomeAnnotation Infrastructure Sequencing
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.45.0
URL https://bioconductor.org/packages/GenomicRanges
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Bioconductor/GenomicRanges")
Bioconductor/GenomicRanges documentation built on May 25, 2021, 5:48 a.m.