sheffien/LOLA: Locus overlap analysis for enrichment of genomic ranges

Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.

Getting started

Package details

AuthorNathan Sheffield <http://www.databio.org> [aut, cre], Christoph Bock [ctb]
Bioconductor views ChIPSeq FunctionalGenomics GeneRegulation GeneSetEnrichment GenomeAnnotation MethylSeq Sequencing SystemsBiology
MaintainerNathan Sheffield <[email protected]>
LicenseGPL-3
Version1.9.4
URL http://code.databio.org/LOLA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("sheffien/LOLA")
sheffien/LOLA documentation built on May 7, 2018, 12:58 a.m.