readCollectionFiles: Given a database and a collection, this will create the...

In sheffien/LOLA: Locus overlap analysis for enrichment of genomic ranges

Description

Given a database and a collection, this will create the region annotation data.table; either giving a generic table based on file names, or by reading in the annotation data.

Usage

readCollectionFiles(dbLocation, collection, refreshSizes = FALSE)

Arguments

dbLocation	folder where your regionDB is stored.
collection	Collection folder to load
refreshSizes	should I recreate the sizes files documenting how many regions (lines) are in each region set?

Value

A data.table annotating the regions in the collections.

Examples

dbPath = system.file("extdata", "hg19", package="LOLA")
regionAnno = readCollectionFiles(dbLocation=dbPath, "ucsc_example")

sheffien/LOLA documentation built on Sept. 3, 2020, 8:29 p.m.