readCollectionFiles: Given a database and a collection, this will create the...

Description Usage Arguments Value Examples

View source: R/loadRegionDB.R

Description

Given a database and a collection, this will create the region annotation data.table; either giving a generic table based on file names, or by reading in the annotation data.

Usage

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readCollectionFiles(dbLocation, collection, refreshSizes = FALSE)

Arguments

dbLocation

folder where your regionDB is stored.

collection

Collection folder to load

refreshSizes

should I recreate the sizes files documenting how many regions (lines) are in each region set?

Value

A data.table annotating the regions in the collections.

Examples

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dbPath = system.file("extdata", "hg19", package="LOLA")
regionAnno = readCollectionFiles(dbLocation=dbPath, "ucsc_example")

sheffien/LOLA documentation built on May 7, 2018, 12:58 a.m.