readCollection: Given a bunch of region set files, read in all those flat...

Description Usage Arguments Value Examples

View source: R/loadRegionDB.R

Description

Given a bunch of region set files, read in all those flat (bed) files and create a GRangesList object holding all the region sets. This function is used by readRegionGRL to process annotation objects.

Usage

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readCollection(filesToRead, limit = NULL)

Arguments

filesToRead

a vector containing bed files

limit

for testing purposes, limit the number of files read. NULL for no limit (default).

Value

A GRangesList with the GRanges in the filesToRead.

Examples

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files = list.files(system.file("extdata", "hg19/ucsc_example/regions",
 package="LOLA"), pattern="*.bed")
regionAnno = readCollection(files)

sheffien/LOLA documentation built on May 7, 2018, 12:58 a.m.