Bioconductor/GenomicFeatures: Conveniently import and query gene models

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

Getting started

Package details

Bioconductor views Annotation Genetics GenomeAnnotation Infrastructure Sequencing
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Bioconductor/GenomicFeatures documentation built on Aug. 31, 2023, 4:49 a.m.