Files in Bioconductor/GenomicFeatures
Tools for making and manipulating transcript centric annotations

.BBSoptions
DESCRIPTION
NAMESPACE
NEWS
R/Ensembl.utils.R R/FeatureDb-class.R R/TxDb-SELECT-helpers.R R/TxDb-class.R R/TxDb-schema.R R/coordinate-mapping-methods.R R/coverageByTranscript.R R/disjointExons.R R/exonicParts.R R/extractTranscriptSeqs.R R/extractUpstreamSeqs.R R/features.R R/findCompatibleMarts.R R/getPromoterSeq-methods.R R/id2name.R R/makeFeatureDbFromUCSC.R R/makeTxDb.R R/makeTxDbFromBiomart.R R/makeTxDbFromEnsembl.R R/makeTxDbFromGFF.R R/makeTxDbFromGRanges.R R/makeTxDbFromUCSC.R R/makeTxDbPackage.R R/mapIdsToRanges.R R/microRNAs.R R/nearest-methods.R R/select-methods.R R/transcriptLengths.R R/transcriptLocs2refLocs.R R/transcripts.R R/transcriptsBy.R R/transcriptsByOverlaps.R R/utils.R R/zzz.R
TODO
inst/CITATION
inst/extdata/Biomart_Ensembl_sample.sqlite
inst/extdata/FeatureDb.sqlite
inst/extdata/GFF3_files/NC_011025.gff
inst/extdata/GFF3_files/TheCanonicalGene_v1.gff3
inst/extdata/GFF3_files/TheCanonicalGene_v2.gff3
inst/extdata/GFF3_files/a.gff3
inst/extdata/GFF3_files/a.sqlite
inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff
inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite
inst/extdata/GTF_files/Aedes_aegypti.partial.gtf
inst/extdata/GTF_files/Aedes_aegypti.partial.sqlite
inst/extdata/GTF_files/test1.gtf
inst/extdata/cD.exByEdge-SG-Vig.Rda
inst/extdata/cD.exsByGenes-SG-Vig.Rda
inst/extdata/events.Rda
inst/extdata/hg19_knownGene_sample.rda
inst/extdata/hg19_knownGene_sample.sqlite
inst/extdata/hg19_knownToLocusLink_sample.rda
inst/extdata/sample_ranges.rds
inst/script/makeTxDbs.R inst/script/maketRNAFDb.R
inst/txdb-template/DESCRIPTION
inst/txdb-template/NAMESPACE
inst/txdb-template/R/zzz.R
inst/txdb-template/man/package.Rd
inst/unitTests/test_TxDb_seqinfo.R inst/unitTests/test_coordinate-mapping-methods.R inst/unitTests/test_disjointExons.R inst/unitTests/test_getPromoterSeq-methods.R inst/unitTests/test_makeIdsForUniqueDataFrameRows.R inst/unitTests/test_makeTxDb.R inst/unitTests/test_makeTxDbFromBiomart.R inst/unitTests/test_makeTxDbFromGFF.R inst/unitTests/test_makeTxDbFromGRanges.R inst/unitTests/test_makeTxDbFromUCSC.R inst/unitTests/test_mapIdsToRanges.R inst/unitTests/test_select-methods.R inst/unitTests/test_transcripts.R inst/unitTests/test_transcriptsBy.R inst/unitTests/test_transcriptsByOverlaps.R man/DEFAULT_CIRC_SEQS.Rd man/FeatureDb-class.Rd man/TxDb-class.Rd man/as-format-methods.Rd man/coordinate-mapping-methods.Rd man/coverageByTranscript.Rd man/disjointExons.Rd man/exonicParts.Rd man/extractTranscriptSeqs.Rd man/extractUpstreamSeqs.Rd man/features.Rd man/getPromoterSeq-methods.Rd man/id2name.Rd man/makeFeatureDbFromUCSC.Rd man/makeTxDb.Rd man/makeTxDbFromBiomart.Rd man/makeTxDbFromEnsembl.Rd man/makeTxDbFromGFF.Rd man/makeTxDbFromGRanges.Rd man/makeTxDbFromUCSC.Rd man/makeTxDbPackage.Rd man/mapIdsToRanges.Rd man/mapRangesToIds.Rd man/microRNAs.Rd man/nearest-methods.Rd man/select-methods.Rd man/transcriptLengths.Rd man/transcriptLocs2refLocs.Rd man/transcripts.Rd man/transcriptsBy.Rd man/transcriptsByOverlaps.Rd tests/run_unitTests.R
vignettes/GenomicFeatures.Rnw
Bioconductor/GenomicFeatures documentation built on Jan. 21, 2018, 6:26 a.m.