mapIdsToRanges: Map IDs to Genomic Ranges

Description Usage Arguments Value Methods (by class) Examples

Description

Map IDs to Genomic Ranges

Usage

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mapIdsToRanges(x, ...)

## S4 method for signature 'TxDb'
mapIdsToRanges(x, keys, type = c("cds", "exon", "tx",
  "gene"), columns = NULL)

Arguments

x

Database to use for mapping

keys

Values to lookup, passed to transcripts et. al.

type

Types of feature to return

columns

Additional metadata columns to include in the output

...

Additional arguments passed to methods

Value

GRangesList corresponding to the keys

Methods (by class)

Examples

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fl <- system.file(package = "GenomicFeatures", "extdata", "sample_ranges.rds")
txdb <- makeTxDbFromGRanges(readRDS(fl))

keys <- list(tx_name = c("ENST00000371582", "ENST00000371588",
    "ENST00000494752", "ENST00000614008", "ENST00000496771"))
mapIdsToRanges(txdb, keys = keys, type = "tx")

Bioconductor/GenomicFeatures documentation built on May 25, 2021, 5:47 a.m.