rGREAT: Client for GREAT Analysis

This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rGREAT")
AuthorZuguang Gu
Bioconductor views Coverage GO GeneSetEnrichment GenomeAnnotation Pathways Sequencing Software WholeGenome
Date of publication2016-9-26 00:00:00
MaintainerZuguang Gu <z.gu@dkfz.de>
LicenseGPL (>= 2)
Version1.6.0
https://github.com/jokergoo/rGREAT

View on Bioconductor

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/00_S4_generic_methods.R R/global.R R/great.R
build
build/vignette.rds
inst
inst/doc
inst/doc/rGREAT.R
inst/doc/rGREAT.Rmd
inst/doc/rGREAT.html
inst/extdata
inst/extdata/job.rds
inst/tests
man
man/GreatJob-class.rd
man/availableCategories-GreatJob-method.rd
man/availableOntologies-GreatJob-method.rd
man/getEnrichmentTables-GreatJob-method.rd
man/plotRegionGeneAssociationGraphs-GreatJob-method.rd
man/submitGreatJob.rd
test
tests
tests/test-all.R
tests/testthat
tests/testthat/test_available.R tests/testthat/test_great.R
vignettes
vignettes/custom.css
vignettes/rGREAT.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.