rGREAT: Client for GREAT Analysis

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This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.

Author
Zuguang Gu
Date of publication
2016-9-26 00:00:00
Maintainer
Zuguang Gu <z.gu@dkfz.de>
License
GPL (>= 2)
Version
1.6.0
URLs

View on Bioconductor

Files in this package

rGREAT/DESCRIPTION
rGREAT/NAMESPACE
rGREAT/NEWS
rGREAT/R
rGREAT/R/00_S4_generic_methods.R
rGREAT/R/global.R
rGREAT/R/great.R
rGREAT/build
rGREAT/build/vignette.rds
rGREAT/inst
rGREAT/inst/doc
rGREAT/inst/doc/rGREAT.R
rGREAT/inst/doc/rGREAT.Rmd
rGREAT/inst/doc/rGREAT.html
rGREAT/inst/extdata
rGREAT/inst/extdata/job.rds
rGREAT/inst/tests
rGREAT/man
rGREAT/man/GreatJob-class.rd
rGREAT/man/availableCategories-GreatJob-method.rd
rGREAT/man/availableOntologies-GreatJob-method.rd
rGREAT/man/getEnrichmentTables-GreatJob-method.rd
rGREAT/man/plotRegionGeneAssociationGraphs-GreatJob-method.rd
rGREAT/man/submitGreatJob.rd
rGREAT/test
rGREAT/tests
rGREAT/tests/test-all.R
rGREAT/tests/testthat
rGREAT/tests/testthat/test_available.R
rGREAT/tests/testthat/test_great.R
rGREAT/vignettes
rGREAT/vignettes/custom.css
rGREAT/vignettes/rGREAT.Rmd