jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

GREAT (Genomic Regions Enrichment of Annotations Tool) is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm (the local GREAT analysis), also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.

Getting started

Package details

AuthorZuguang Gu
Bioconductor views Coverage GO GeneSetEnrichment GenomeAnnotation Pathways Sequencing Software WholeGenome
Maintainer
LicenseMIT + file LICENSE
Version1.99.2
URL https://github.com/jokergoo/rGREAT http://great.stanford.edu/public/html/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jokergoo/rGREAT")
jokergoo/rGREAT documentation built on June 9, 2022, 9:26 a.m.