getRegionGeneAssociations-GreatObject-method: Get region-gene associations

In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

Get region-gene associations

Description

Get region-gene associations

Usage

## S4 method for signature 'GreatObject'
getRegionGeneAssociations(object, term_id = NULL, by_middle_points = FALSE,
    use_symbols = TRUE)

Arguments

object	A GreatObject-class object returned by great.
term_id	Term ID.
by_middle_points	Whether the distances are calculated from the middle points of input regions?
use_symbols	Whether to use gene symbols

Value

A GRanges object. Please the two meta columns are in formats of CharacterList and IntegerList because a region may associate to multiple genes.

Examples

obj = readRDS(system.file("extdata", "GreatObject.rds", package = "rGREAT"))
getRegionGeneAssociations(obj)

jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.