read_gmt: Read gmt gene sets file
In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions
read_gmt R Documentation
Read gmt gene sets file
Description
Read gmt gene sets file
Usage
read_gmt(x, from = NULL, to = NULL, orgdb = NULL)
Arguments
x
The file name of a .gmt file.
from
Gene ID type in the original gmt file. Value can only take values in 'ENTREZ/SYMBOL/ENSEMBL/REFSEQ'.
to
Gene ID type that you want to convert to. Value can only take values in 'ENTREZ/SYMBOL/ENSEMBL/REFSEQ'.
orgdb
The name of an OrgDb database.
Value
A named list of vectors.
Examples
read_gmt(url("http://dsigdb.tanlab.org/Downloads/D2_LINCS.gmt"))
jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.
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| read_gmt | R Documentation |
Read gmt gene sets file
Description
Read gmt gene sets file
Usage
read_gmt(x, from = NULL, to = NULL, orgdb = NULL)
Arguments
x |
The file name of a .gmt file. |
from |
Gene ID type in the original gmt file. Value can only take values in 'ENTREZ/SYMBOL/ENSEMBL/REFSEQ'. |
to |
Gene ID type that you want to convert to. Value can only take values in 'ENTREZ/SYMBOL/ENSEMBL/REFSEQ'. |
orgdb |
The name of an OrgDb database. |
Value
A named list of vectors.
Examples
read_gmt(url("http://dsigdb.tanlab.org/Downloads/D2_LINCS.gmt"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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