getEnrichmentTable-GreatObject-method: Get enrichment table

In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

Get enrichment table

Description

Get enrichment table

Usage

## S4 method for signature 'GreatObject'
getEnrichmentTable(object, min_region_hits = 5)

Arguments

object	A GreatObject-class object returned by great.
min_region_hits	Minimal number of input regions overlapping to the geneset associated regions.

Details

Note: adjusted p-values are re-calculated based on min_region_hits.

Value

A data frame of enrichment results

Examples

obj = readRDS(system.file("extdata", "GreatObject.rds", package = "rGREAT"))
getEnrichmentTable(obj)

jokergoo/rGREAT documentation built on March 5, 2025, 1:34 p.m.