getEnrichmentTable-GreatObject-method: Get enrichment table
In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions
getEnrichmentTable-GreatObject-method R Documentation
Get enrichment table
Description
Get enrichment table
Usage
## S4 method for signature 'GreatObject'
getEnrichmentTable(object, min_region_hits = 5)
Arguments
object
A GreatObject-class object returned by great.
min_region_hits
Minimal number of input regions overlapping to the geneset associated regions.
Details
Note: adjusted p-values are re-calculated based on min_region_hits.
Value
A data frame of enrichment results
Examples
obj = readRDS(system.file("extdata", "GreatObject.rds", package = "rGREAT"))
getEnrichmentTable(obj)
jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| getEnrichmentTable-GreatObject-method | R Documentation |
Get enrichment table
Description
Get enrichment table
Usage
## S4 method for signature 'GreatObject'
getEnrichmentTable(object, min_region_hits = 5)
Arguments
object |
A |
min_region_hits |
Minimal number of input regions overlapping to the geneset associated regions. |
Details
Note: adjusted p-values are re-calculated based on min_region_hits.
Value
A data frame of enrichment results
Examples
obj = readRDS(system.file("extdata", "GreatObject.rds", package = "rGREAT"))
getEnrichmentTable(obj)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.