extendTSSFromOrgDb: Extend TSS

In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

Extend TSS

Description

Extend TSS

Usage

extendTSSFromOrgDb(orgdb, verbose = great_opt$verbose, ...)

Arguments

orgdb	Name of "org.*" packages from Bioconductor. All supported OrgDb packages are in rGREAT:::BIOC_ANNO_PKGS$orgdb.
verbose	Whether to print messages.
...	All pass to extendTSS.

Value

A GRanges object with one meta column 'gene_id'.

Examples

if(FALSE) {
extendTSSFromOrgDb("Org.Hs.eg.db")
extendTSSFromOrgDb("hg19")
}

jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.