getEnrichmentTable-GreatJob-method: Get a single enrichment table from GREAT web server

In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

Get a single enrichment table from GREAT web server

Description

Get a single enrichment table from GREAT web server

Usage

## S4 method for signature 'GreatJob'
getEnrichmentTable(object, ontology, ...)

Arguments

object	A GreatJob-class object returned by submitGreatJob.
ontology	A single ontology names. Valid values are in availableOntologies.
...	All pass to getEnrichmentTables,GreatJob-method.

Value

A data frame of the enrichment results for a single ontology.

Examples

job = readRDS(system.file("extdata", "GreatJob.rds", package = "rGREAT"))
tb = getEnrichmentTable(job, ontology = "GO Molecular Function")
head(tb)

jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.