yuhuihui2011/MEPmodeler: Predict MicroExons in Plant Genomes
MEPmodeler searches microexon-tags in 45 conserved microexon clusters in plant genomes using gapped Position Weight Matrix (PWM). The only one function, MEPmod, uses the data MEPdata to mode microexon-tags in plant genomes. The only input file is plant genomic sequences or a plant genome. The sequences on both plus and minus strands will be scanned.
Getting started
Browse package contents
Package details |
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| Bioconductor views | AlternativeSplicing FunctionalPrediction GenePrediction GenomeAnnotation RNASeq |
| Maintainer | |
| License | GPL (>= 2.0) |
| Version | 1.0.1 |
| URL | https://github.com/yuhuihui2011/MEPmodeler |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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