MEPdata: Information of 45 microexon-tag clusters in plant

In yuhuihui2011/MEPmodeler: Predict MicroExons in Plant Genomes

Information of 45 microexon-tag clusters in plant

Description

MEPdata contains information of 45 microexon-tag clusters in plants.

Usage

data(MEPdata)

Format

A list containing three elements:

• MEPdata$cluster: a data.frame containing microexon-tag cluster (cluster), microexon size (zise) and phase (phase), the coding motif (motif), number of exons (exons) and the order of microexon (me_order).

• MEPdata$blocks: an IntegerList containing exon blocks in each cluster.

• MEPdata$matrix: a list of 45 elements containng the DNA consensus matrix of ecach cluster.

Examples

data(MEPdata)
names(MEPdata)
sapply(MEPdata, class)
head(MEPdata$cluster)
head(MEPdata$blocks)
names(MEPdata$matrix)

# Microexon cluster 8
MEPdata$cluster[8,]
MEPdata$blocks[[8]]
MEPdata$matrix[[8]]
ggseqlogo::ggseqlogo(MEPdata$matrix[[8]][,53:57])

yuhuihui2011/MEPmodeler documentation built on Oct. 12, 2023, 2:19 p.m.