HilbertCurve: Making 2D Hilbert Curve
Version 1.6.0

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

Browse man pages Browse package API and functions Browse package files

AuthorZuguang Gu
Bioconductor views Coverage GenomeAnnotation Sequencing Software Visualization
Date of publication2017-4-16 00:00:00
MaintainerZuguang Gu <z.gu@dkfz.de>
LicenseGPL (>= 2)
Version1.6.0
URL https://github.com/jokergoo/HilbertCurve
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("HilbertCurve")

Man pages

default_overlay: Default color overlay for adding new layers
GenomicHilbertCurve: Initialize a Hilbert curve specifically for genomic data
GenomicHilbertCurve-class: The GenomicHilbertCurve class
hc_centered_text-HilbertCurve-method: Add text to the center of the block
hc_layer-dispatch: Method dispatch page for hc_layer
hc_layer-GenomicHilbertCurve-method: Add a new layer to the Hilbert curve
hc_layer-HilbertCurve-method: Add a new layer to the Hilbert curve
hc_level-HilbertCurve-method: Level of the Hilbert curve
hc_map-GenomicHilbertCurve-method: Draw a map which represents positions of different...
hc_normal_points-HilbertCurve-method: Add points to the Hilbert curve
hc_offset-HilbertCurve-method: Adjust positions
hc_png-HilbertCurve-method: Save Hilbert curve as a PNG figure
hc_points-dispatch: Method dispatch page for hc_points
hc_points-GenomicHilbertCurve-method: Add points to the Hilbert curve
hc_points-HilbertCurve-method: Add points to the Hilbert curve
hc_polygon-dispatch: Method dispatch page for hc_polygon
hc_polygon-GenomicHilbertCurve-method: Add text to Hilbert curve
hc_polygon-HilbertCurve-method: Add polygons to Hilbert curve
hc_rect-dispatch: Method dispatch page for hc_rect
hc_rect-GenomicHilbertCurve-method: Add rectangles on Hilbert curve
hc_rect-HilbertCurve-method: Add rectangles on Hilbert curve
hc_segmented_points-HilbertCurve-method: Add points to the Hilbert curve
hc_segments-dispatch: Method dispatch page for hc_segments
hc_segments-GenomicHilbertCurve-method: Add line segments to Hilbert curve
hc_segments-HilbertCurve-method: Add line segments to Hilbert curve
hc_text-dispatch: Method dispatch page for hc_text
hc_text-GenomicHilbertCurve-method: Add text to Hilbert curve
hc_text-HilbertCurve-method: Add text to Hilbert curve
HilbertCurve: Initialize a Hilbert curve
HilbertCurve-class: The HilbertCurve class
show-HilbertCurve-method: Print the HilbertCurve object
unzoom-HilbertCurve-method: Transform zoomed positions to their original values
zoom-HilbertCurve-method: Zoom original positions

Functions

GenomicHilbertCurve Man page Source code
GenomicHilbertCurve-class Man page
HilbertCurve Man page Source code
HilbertCurve-class Man page
add_raster Source code
average_in_window Source code
default_overlay Man page Source code
flip Source code
get_plot_index Source code
grid_arrows Source code
hc_centered_text Man page
hc_centered_text,HilbertCurve-method Man page
hc_layer Man page
hc_layer,GenomicHilbertCurve-method Man page
hc_layer,HilbertCurve-method Man page
hc_level Man page
hc_level,HilbertCurve-method Man page
hc_map Man page
hc_map,GenomicHilbertCurve-method Man page
hc_normal_points Man page
hc_normal_points,HilbertCurve-method Man page
hc_offset Man page
hc_offset,HilbertCurve-method Man page
hc_png Man page
hc_png,HilbertCurve-method Man page
hc_points Man page
hc_points,GenomicHilbertCurve-method Man page
hc_points,HilbertCurve-method Man page
hc_polygon Man page
hc_polygon,GenomicHilbertCurve-method Man page
hc_polygon,HilbertCurve-method Man page
hc_rect Man page
hc_rect,GenomicHilbertCurve-method Man page
hc_rect,HilbertCurve-method Man page
hc_segmented_points Man page
hc_segmented_points,HilbertCurve-method Man page
hc_segments Man page
hc_segments,GenomicHilbertCurve-method Man page
hc_segments,HilbertCurve-method Man page
hc_text Man page
hc_text,GenomicHilbertCurve-method Man page
hc_text,HilbertCurve-method Man page
increase_plot_index Source code
merge_into_one_chr Source code
recycle_gp Source code
rotate Source code
show Man page
show,HilbertCurve-method Man page
subset_gp Source code
unzoom Man page
unzoom,HilbertCurve-method Man page
validate_gpar Source code
which_border Source code
zoom Man page
zoom,HilbertCurve-method Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/00_S4_generic_methods.R
R/GenomicHilbertCurve.R
R/HilbertCurve.R
R/hc_polygon.R
R/utils.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/HilbertCurve.R
inst/doc/HilbertCurve.Rmd
inst/doc/HilbertCurve.html
inst/doc/move-on-hilbert-curve-.webm
inst/extdata
inst/extdata/chinese_dynasty.RData
inst/extdata/cidr_list.RData
inst/extdata/mouse_net.RData
inst/extdata/refseq_chr1.RData
inst/extdata/zebrafish_net.RData
inst/tests
inst/tests/test-average.R
man
man/GenomicHilbertCurve-class.rd
man/GenomicHilbertCurve.rd
man/HilbertCurve-class.rd
man/HilbertCurve.rd
man/default_overlay.rd
man/hc_centered_text-HilbertCurve-method.rd
man/hc_layer-GenomicHilbertCurve-method.rd
man/hc_layer-HilbertCurve-method.rd
man/hc_layer-dispatch.rd
man/hc_level-HilbertCurve-method.rd
man/hc_map-GenomicHilbertCurve-method.rd
man/hc_normal_points-HilbertCurve-method.rd
man/hc_offset-HilbertCurve-method.rd
man/hc_png-HilbertCurve-method.rd
man/hc_points-GenomicHilbertCurve-method.rd
man/hc_points-HilbertCurve-method.rd
man/hc_points-dispatch.rd
man/hc_polygon-GenomicHilbertCurve-method.rd
man/hc_polygon-HilbertCurve-method.rd
man/hc_polygon-dispatch.rd
man/hc_rect-GenomicHilbertCurve-method.rd
man/hc_rect-HilbertCurve-method.rd
man/hc_rect-dispatch.rd
man/hc_segmented_points-HilbertCurve-method.rd
man/hc_segments-GenomicHilbertCurve-method.rd
man/hc_segments-HilbertCurve-method.rd
man/hc_segments-dispatch.rd
man/hc_text-GenomicHilbertCurve-method.rd
man/hc_text-HilbertCurve-method.rd
man/hc_text-dispatch.rd
man/show-HilbertCurve-method.rd
man/unzoom-HilbertCurve-method.rd
man/zoom-HilbertCurve-method.rd
tests
tests/test-all.R
tests/testthat
tests/testthat/test-average.R
vignettes
vignettes/H3K27ac_chr1.png
vignettes/H3K36me3_chr1.png
vignettes/H3K36me3_chr1_overlap.png
vignettes/H3K4me3_chr1.png
vignettes/H3K9me3_chr1.png
vignettes/HilbertCurve.Rmd
vignettes/chinese_dynasty.png
vignettes/cnv_all_chromosomes.png
vignettes/cnv_all_chromosomes_border.png
vignettes/cnv_all_chromosomes_overlay.png
vignettes/cnv_compare.png
vignettes/custom.css
vignettes/gc_percent_chr1.png
vignettes/gc_percent_chr1_points.png
vignettes/gc_percent_half_chr1.png
vignettes/map_all_chromosomes.png
vignettes/methylation_chr1.png
vignettes/move-on-hilbert-curve-.webm
HilbertCurve documentation built on May 20, 2017, 9:54 p.m.